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Table 1 HRM primer sequences

From: Clinical pharmacogenomic testing of KRAS, BRAF and EGFRmutations by high resolution melting analysis and ultra-deep pyrosequencing

Gene

Exon

Primer sequence

Amplicon size

KRAS

2

F: 5'-GGCCTGCTGAAAATGACTGAATATAA-3'

170 bp [26]

  

R: 5'-AAAGAATGGTCCTGCACCAGTA-3'

 

BRAF

15

F: 5'-TCATGAAGACCTCACAGTAAAAATAGG-3'

164 bp

  

R: 5'-AGCAGCATCTCAGGGCCAAA-3'

 

EGFR

19

F: 5'-GTGCATCGCTGGTAACATCCA-3'

250 bp§ [27]

  

R: 5'-AAAGGTGGGCCTGAGGTTCA-3'

 

EGFR

20

F: 5'-ACCTCCACCGTGCA(T*)CTCAT-3'

128 bp

  

R: 5'- ATTACCTTTGCGATCTGAACACACC -3'

 

EGFR

21

F: 5'-CCTCACAGCAGGGTCTTCTCTG-3'

210 bp§ [27]

  

R: 5'-TGGCTGACCTAAAGCCACCTC-3'

 
  1. F: forward, R: reverse.
  2. § These amplicons span the entire exon.
  3. (*) Mismatched base introduced to prevent SNP interference (c.2361G > A) and allelic preference.