Table 2 Genes selected for resequencing based on NMD oligoarray analysis
Gene ID | Gene name | Cytogenetic band | Genomic location (strand) | Selection criteria |
|---|---|---|---|---|
RBMX | RNA binding motif protein, X-linked | Xq26.3 | 135 951 351-135 962 939 bp (-) | p < 0.05 |
CSAG2 | Homo sapiens CSAG family, member 2 | Xq28 | 151 922 445-151 928 738 bp (+) | p < 0.05 |
RAP2C | Homo sapiens RAP2C, member of RAS | Xq25 | 131 337 053-131 353 471 bp (-) | p < 0.05, fold change > 1.5 |
SOX3 | SRY (sex determining region Y)-box 3 | Xq27.1 | 139 585 152-139 587 225 bp (-) | p < 0.05 |
MBNL3 | Muscleblind-like 3, (Drosophila) | Xq26.2 | 131 506 029-131 623 996 bp (-) | p < 0.05 |
ZNF75 | Zinc finger protein 75 | Xq26.3 | 134 382 867-134 478 012 bp (-) | p < 0.05 |
MAGEC1 | Melanoma antigen family C, 1 | Xq26 | 140 991 680-140 997 183 bp (+) | p < 0.05 |
MAGEA1 | Melanoma antigen family A, 1 | Xq28 | 152 481 522-152 486 116 bp (-) | p < 0.05, fold change > 1.5 |
MAGEA11 | Melanoma antigen family A, 11 | Xq28 | 148 769 894-148,798,928 bp (+) | location |
MAGEC3 | Melanoma antigen family C, 3 | Xq27.2 | 140 926 102-140 985 618 bp (+) | location |
MAGED1 | Melanoma antigen family D, 1 | Xp11.23 | 51 546 103-51 645 453 bp (+) | p < 0.05 |
U66046 | hypothetical protein FLJ44451 | Xq28 | 148 615 451-148 616 127 bp (-) | p < 0.05 |
SSR4 | signal sequence receptor, delta | Xq28 | 153 058 971-153 063 960 bp (+) | p < 0.05 |
VBP1 | von Hippel-Lindau binding protein 1 | Xq28 | 154 444 550-154 468 098 bp (+) | p < 0.05 |
LDOC1 | leucine zipper, down-regulated in cancer, 1 | Xq27 | 140 269 930-140 271 310 bp (-) | p < 0.05 |
TKTL1 | transketolase-like 1 | Xq28 | 153 524 024-153 558 700 bp (+) | p < 0.05 |
CD40LG | CD40 ligand | Xq26 | 135 730 336-135 742 549 bp (+) | p < 0.05 |