Table 1 Genes up-regulated in the TB interface and their fold-change relative to the TA area.
Gene | Affymetrix probe ID | Description | Fold change | p- value | FDR p- value |
|---|---|---|---|---|---|
Ibsp | 1417484_at or 1417485_at | Integrin binding sialoprotein | 7.2 | 0.05 | 0.2 |
Tnfsf11 (Rankl) | 1419083_at or 1451944_a_at | Tumor necrosis factor (ligand) superfamily, member 11 | 5.3 | 0.006 | 0.1 |
Aftph | 1426861_at | Afitiphilin | 4.8 | 0.05 | 0.2 |
Mmp13 | 1417256_at | Matrix metalloproteinase 13 | 4.7 | 0.05 | 0.2 |
Anks1b | 1447464_at | Ankyrin repeat and sterile alpha motif domain containing 1B | 4.4 | 0.02 | 0.1 |
Zic1 | 1423477_at or 1439627_at | Zinc finger protein of the cerebellum 1 | 3.7 | 0.09 | 0.2 |
Drd1a | 1455629_at or 1456051_at | Dopamine receptor 1A | 3.6 | 0.005 | 0.1 |
Alpk2 | 1452478_at | Alpha-kinase 2 | 3.2 | 0.005 | 0.1 |
Smoc2 | 1415935_at or 1431362_a_at | SPARC related modular calcium binding 2 | 3.2 | 0.01 | 0.1 |