The Colorectal cancer disease-specific transcriptome may facilitate the discovery of more biologically and clinically relevant information

Table 4 Sense and antisense in vitro analysis

DSA-specific probesets	Sense	Antisense	SAS pairs
All probesets	6073	5324	2456
Sensitive experiment Detection	638	661	45
Resistant experiment Detection	724	760	68
Sensitive experiment Detection + DE	267	234	9
Resistant experiment Detection + DE	215	223	8

Table displaying the number of genes (DSA-specific) in the sense and antisense orientation for the 5-FU sensitive and resistant in vitro experiment. Also displayed is the total number of probesets that are represented in both the sense and antisense orientation (SAS pairs). All analyses include genes identified from detection +/- differential expression filtering. Acronyms used: DSA: Disease-specific array, SAS: sense:antisense pairs, Detection: probesets passing Affymetrix flag calls, DE: differential expression.

ISSN: 1471-2407