Overexpression of TNFα induces senescence, autophagy and mitochondrial dysfunctions in melanoma cells

Background Tumor necrosis factor alpha (TNFα) is a pleiotropic cytokine with both anti-tumorigenic and pro-tumorigenic activity, affecting tumor cell biology, the balance between cell survival and death. The final effect of TNFα is dependent on the type of malignant cells, with the potential to arrest cancer progression. Methods In order to explain the diverse cellular response to TNFα, we engineered melanoma and colorectal carcinoma cell lines stably overexpressing this cytokine. Results Under the TNFα overexpression, significant upregulation of two genes was observed: proinflammatory cytokine IL6 gene in melanoma cells A375 and gene for pro-apoptotic ligand TRAIL in colorectal carcinoma cells HT29, both mediated by TNFα/TNFR1 signaling. Malignant melanoma line A375 displayed also increased autophagy on day 3, followed by premature senescence on day 6. Both processes seem to be interconnected, following earlier apoptosis induction and deregulation of mitochondrial functions. We documented altered mitochondrial status, lowered ATP production, lowered mitochondrial mass, and changes in mitochondrial morphology (shortened and condensed mitochondria) both in melanoma and colorectal carcinoma cells. Overexpression of TNFα was not linked with significant affection of the subpopulation of cancer stem-like cells in vitro. However, we could demonstrate a decrease in aldehyde dehydrogenase (ALDH) activity up to 50%, which is associated with to the stemness phenotype. Conclusions Our in vitro study of direct TNFα influence demonstrates two distinct outcomes in tumor cells of different origin, in non-epithelial malignant melanoma cells of neural crest origin, and in colorectal carcinoma cells derived from the epithelium. Supplementary Information The online version contains supplementary material available at 10.1186/s12885-021-08237-1.


Background
Tumor necrosis factor α (TNFα), a key inflammatory cytokine, can drive both tumor elimination and promotion in cancer patients, depending on the dose and cancer type [1][2][3]. Overexpression of TNFα in engineered tumor cells (myeloma, fibrosarcoma, breast carcinoma) blocks their engraftment and growth in mice and creates a tumor suppressive microenvironment [4][5][6][7]. The effect of TNFα is pleiotropic, modulating the tumor microenvironment via paracrine mechanisms in the context of the cancer tissue. Despite possible positive antitumor effects, the use of this cytokine for therapeutic applications in humans is very limited. TNFα was used as a 'pre-activator' of human mesenchymal stromal cells (MSCs), which were stimulated to produce pro-apoptotic ligand TRAIL and reduced growth of experimental metastases [8]. Engineered MSC overexpressing TNFα, coinjected with malignant melanoma cells, reduced growth of subcutaneous xenografts. Such engineered TNFα-MSC kept the TNFα production for more than 3 months and lost their significant tumor supportive potential [9]. But they had no inhibitory potential on induced experimental melanoma lung metastases after systemic administration [10].
The subpopulation of cancer stem-like cells (CSCs) is believed to be responsible for the relapse of cancer disease and is able to initiate tumor growth and metastases [11,12]. CSCs are identified as the population of tumor cells positive for the unique composition of CSCs markers (CD133, CD44, CD166, ALDH positivity, and others, depending on cancer type). TNFα can affect CSCs subpopulation in vitro and enhances CSCs-like phenotype of oral squamous cell carcinoma [13] and pancreatic cancer cells [14]. Inflammatory factors can promote breast CSCs via canonical NF-κB/HIF1α signaling, enhanced by p53 inactivation [15] or via the noncanonical NF-κB pathway [16]. Long-term treatment of breast cancer cell line with a combination of TNFα and TGFβ induced epithelial-mesenchymal transition, mammosphere formation, and extreme overexpression of genes associated with stemness [17].
Between senescence and autophagy (both considered as possible hallmarks of cancer) [18] is a strong relationship and both are usually started in stress conditions, such as oxidative stress, DNA damage, mitochondrial damage and oncogene activation. Studies suggest that autophagy promotes senescence, while other reports show that mechanism of autophagy can be anti-senescent [19]. Autophagy is usually cytoprotective, maintaining healthy cells, preventing tissue damage, and cancer initiation. After suppression of the autophagy, an increase of cancer-related inflammation was observed. On the other hand, autophagy enhances stress tolerance and fulfils the high nutrient demands of cancer cells (reviewed in [20,21]). Senescence is also a tumor-suppressive mechanism, eliminating potentially dangerous mutated cells and providing a barrier against tumorigenesis. Premature senescence is one of the outcomes of chemo-and radiotherapy in cancer treatment. Senescent cells in situ affect their microenvironment by secretion of chemokines, pro-inflammatory cytokines, and proteases, creating senescence-related secretory phenotype (SASP) (reviewed in [19,22]). All processes initiated by TNFα are under the dominant control of ubiquitously expressed receptor TNFR1, although receptor TNFR2 may contribute to these changes as well. TNFα triggers both autophagy and pro-survival NF-κB signaling via receptor TNFR1 [23]. TNFα is directly involved in the generation of reactive oxygen species. Because TNFα is affecting mitochondrial ATP production and homeostasis, it is manifested as a mild uncoupler of the respiratory chain [24,25]. In recent years, mitochondria of cancer cells are discussed as new possible targets for antitumor therapy, and the relationship between high mitochondrial mass and stemness phenotype is intensively studied [26,27].
In order to study the direct effects of TNFα on tumor cell biology, we engineered cells of two different origins continually overexpressing human TNFα gene: epithelial colorectal adenocarcinoma lines HT29, HCT116, and malignant melanoma lines A375 and M4Beu of neural crest origin. We examined the subpopulation of CSCs, including the ALDH enzyme activity. We also aimed to show the interconnection of apoptosis, changes in mitochondrial status, autophagy and senescence accompanied by changes of mRNA expression profile.
All chemicals were purchased from Sigma-Aldrich if not stated otherwise.

Kinetic measurement of cell proliferation and caspase 3/7 activation
Octaplicates of 3.0 × 10 3 cells per well were seeded in 96-well plates. Cell proliferation, based on cell confluence analysis, was monitored for 6 days or until the control cells reached 100% confluency. For monitoring of apoptosis induction, the CellPlayer 96-Well Caspase 3/7 reagent (Essen BioScience, Welwyn Garden City, UK) was added to a final concentration of 5 μM. Phase contrast and fluorescent images were acquired every 3 h using the IncuCyte ZOOM Kinetic Imaging System (Essen BioScience) and four images were taken per well. Data were analyzed using IncuCyte ZOOM software. Apoptosis activation was evaluated by dividing the number of specific green fluorescent objects with activated caspase-3/7 by the percentage of the cell confluence, as described is [9]. Proliferation was expressed as mean value of cell confluence in % ± SDs.

Monitoring of mitochondrial DNA content
Genomic and mitochondrial DNA from cultured cells was isolated together by DNazol reagent (BioTeke Corporation, Beijing, China). Mitochondrial DNA content represented by mtDNA gene for 16S rRNA was normalized to a single copy nuclear gene for β2-microglobulin using quantitative real-time PCR according Venegas et al. [28].

Evaluation of aldehyde dehydrogenase (ALDH) activity
To determine the ALDH activity in tumor cell lines, ALDEFLUOR™ Kit (StemCell Technologies) was used according to the manufacturer's instructions. Dead cells were excluded from the analysis based on DAPI or 7AAD staining. Cells were analyzed by BD FACSCanto™ II flow cytometer (Beckton Dickinson) equipped with FacsDiva program. FCS Express software was used for the evaluation.

Autophagy detection
Triplicates of 1.5-3.0 × 10 3 of cells per well were seeded in 12-well plates, incubated for 3-4 days and 1 day prior to staining, fresh media containing 10% FBS were added to the cells. Autophagic vacuoles in live cells were stained with CYTO-ID® Autophagy detection kit (Enzo Life Sciences, Farmingdale, USA) for 30 min according to the manufacturer's instructions. Green fluorescent CYTO-ID signal in autophagic cells was monitored by BD FACSCanto™ II flow cytometer (Beckton Dickinson) or IncuCyte ZOOM Kinetic Imaging System (Essen BioScience); values represent mean fluorescent intensities + SDs.

Senescence β-galactosidase staining
Duplicates of 5-10 × 10 3 of cells per well were seeded in 6-well plates and incubated for 6-7 days. Recombinant human TNFα protein was added 24 or 48 h after seeding at concentration 100 ng/ml. Cells were stained with Senescence β-Galactosidase Staining Kit (Cell Signaling Technology, Danvers, USA) for 24 h according to the manufacturer's instructions. Senescent cells containing blue precipitates were visualized by Zeiss Axiovert 40C microscope and ZEN 2 software (Zeiss, Germany).

Analysis of gene expression
Expression analysis of mRNA for genes listed in Table 1 was determined by reverse transcriptase quantitative PCR (RT-qPCR). Total RNA was isolated from 5 × 10 5 cells using the NucleoSpin RNA II kit (Macherey-Nagel, Dueren, Germany) and was depleted from genomic DNA by DNase treatment (DNase I, RNase-free; Thermo Fisher Scientific). Next, 2 μg of total RNA was reverse transcribed using the SensiFAST cDNA Synthesis kit (Bioline, London, UK) in one reaction. RT-qPCR was performed in triplicates or tetraplicates in Brilliant III Ultra-Fast SYBR QPCR Master Mix (Agilent Technologies, Santa Clara, USA), 250 nM concentration of primers, and 1 μl template cDNA per one reaction. The protocol for RT-qPCR was started with the activation step at 95°C for 3 min and followed by 40 cycles of the denaturation step at 95°C for 15 sec and annealing/ polymerization at 60°C for 15 sec with plate read step at 75°C. PCR was performed in Bio-Rad 96FX cycler (Bio-Rad Laboratories, Hercules, USA) and analyzed with Bio-Rad CFX Manager software version 1.6 as normalized fold expression using the 2 -ΔΔCq method. The gene for hypoxanthine phosphoribosyl transferase 1 (HPRT1) was used as a reference gene. Oligonucleotides were synthesized by Metabion, Int. (Planegg, Germany) ( Table 1).

Results
Overexpression of TNFα has a mild cytotoxic effect on tumor cells in vitro and is limited by the availability of TNFR1 and TNFR2 receptors   Fig. 1b). The viability and proliferation rate of the cells were not decreased (Fig. 1c), but HT29hTNFa cells displayed an accelerated growth rate, similar to other retrovirally transduced cells. Specific executioner caspase 3/7 activation (Fig. 1d) was not robust. In fast proliferating melanoma cells A375hTNFa, the onset of apoptosis was detected during the first 48 h, in HT29hTNFa carcinoma cells, apoptosis was induced on day 3-4 of cultivation. Engineered tumor cells tolerated extensive TNFα overexpression well and easily overcame partial apoptosis induction.

Autophagy and senescence are induced in malignant melanoma cell lines overexpressing TNFα
Autophagy was monitored by labeling with CYTO-ID dye specific for autophagic vacuoles (Fig. 2). In A375hTNFa cells, an increase of autophagic objects of 17% was observed on day 3 or 4 of cultivation. Increase of 10% was detected also in other melanoma cell line M4BeuhTNFa. Colorectal cancer cells displayed no significant increase of autophagic objects (Fig. 2a), but the addition of recombinant human TNFα protein in concentration 100 ng/ml increased autophagy in HT29 cells (data not shown). Fig. 1 Extensive mRNA overexpression of TNFα gene in engineered tumor cells does not change significantly the expression of main receptor TNFR1 and did not decrease the ability to proliferate. Cells can overcome slight caspase induction. Reverse transcriptase quantitative PCR for TNFα gene (a) and receptors TNFR1, TNFR2 (b); expression was normalized to the HPRT reference gene, values are means of triplicates or quadruplicates ± SDs; unpaired t-test was used to statistical analysis. c Continual monitoring of cell proliferation; IncuCyte ZOOM Kinetic Imaging System; means of octaplicates ± SDs; unpaired t-test was used to statistical analysis of confluence at hour 144. d Specific apoptosis induction monitoring (caspase 3/7 activation); IncuCyte ZOOM Kinetic Imaging System; means of octaplicates ± SDs; 100 ng/ml hTNFaparental cells treated with recombinant human TNFα protein. A375, M4Beumelanoma cells, HT29, HCT116colorectal carcinoma cells Significant senescence induction was confirmed in melanoma lines overexpressing TNFα on days 6 and 7. Characteristic enlarged senescent cells containing blue-dyed precipitates indicating increased senescence-associated βgalactosidase activity appeared in both melanoma lines A375hTNFa and M4BeuhTNFa (Fig. 3a-b). Senescence induction was observed also in parental melanoma cells treated with recombinant human TNFα protein (Fig. 3a-b). In colorectal carcinoma cells HT29hTNFa and HCT116h TNFa, no differences in the incidence of senescent cells were observed. HCT116 parental cells entered senescence spontaneously and more frequently in comparison to the HT29 cells (Fig. 3c).

Mitochondrial functions of tumor cells are affected by TNFα overexpression
Because TNFα is manifested as a mild uncoupler of oxidative phosphorylation, the mitochondrial status of engineered tumor cells was monitored. Cellular ATP content was found to be reduced to 75, 61, 85 and 67% in all analyzed TNFα-overexpressing cell lines (Fig. 4a). Mitochondrial mass stained with MitoTracker DeepRed was significantly reduced in A375hTNFa cells (to 75%) and in HT29hTNFa cells (to 82%) compared to parental cells (Fig. 4b). In two other tested cell lines, M4BeuhTNFa and HCT116hTNFa, mitochondrial mass maintained stable. Mitochondrial membrane potential specifically stained with MitoTracker Orange CMT, indicating mitochondrial activity, remained unchanged in engineered cells. Quantitative real-time PCR revealed that the cells also kept constant mitochondrial DNA content under the TNFα overexpression (Additional file 2). Mitochondrial morphology and mitochondrial activity visualized by MitoTracker Orange CMT was not changed significantly, but more condensed and shortened mitochondria with perinuclear localization seemed to Parental cells displayed more tubular mitochondrial network (Fig. 4c).

Aldehyde dehydrogenase activity is significantly reduced in TNFα overexpressing cells
High expression of aldehyde dehydrogenase (ALDH) has been reported in both normal and cancer stem cells and ALDH is considered as a marker of stem cells. The proportion of aldehyde dehydrogenase positive cells (ALDH+) under the overexpression of TNFα in tumor cells was reduced approximately to 50-60% in comparison to parental cells (Fig. 5) in three engineered cell lines. Melanoma cells M4Beu displayed low innate ALDH activity (8.5% of ALDH+ cells), increasing to 10.7% in engineered cells M4BeuhTNFa. Treatment with inhibitor zafirlukast, a compound stabilizing non-functional conformational state of TNFR1 [29], returned the ALDH activity level in engineered melanoma cells A375hTNFa to the level of ALDH activity in parental cells (83.5% vs. 85.4% of ALDH+ cells, unpublished data). In HT29 cells, no significant differences were monitored. Treatment with inhibitor of TNFR1 followed by treatment with recombinant TNFα (100 ng/ml) did not show significantly increased or decreased levels of ALDH activity in A375 and HT29 cells (unpublished results).

mRNA expression profile shows changes in expression of apoptosis-inducing agent TRAIL and cytokine IL6. CSCslike markers remained unchanged
In engineered melanoma cells A375hTNFa, significant overexpression of inflammatory cytokine IL6 was induced (up to 17 times; Fig. 6a). Overexpression of TNFα in cells HT29hTNFa significantly stimulated expression of apoptosis-inducing ligand TRAIL (up to 8 times; Fig.  6b). In A375hTNFa and HT29hTNFa cells, expressions of selected genes encoding stemness markers OCT4, SOX2, NESTIN, and CD133 were not changed significantly in comparison to the parental cells (Fig. 6). No significant changes in expression profile were detected in cells M4BeuhTNFa and HCT116hTNFa (data not shown). Only mRNA for WNT7B gene of WNT-signaling pathway was overexpressed in A375hTNFa cells (Fig. 6a).
Flow cytometric analysis of CSC markers (CD24, CD26, CD44, CD133, CD166, CD271, cMET, EpCAM) did not reveal significant changes in TNFα-engineered cells (Additional file 3). Small divergences were observed, such as a decrease of CD166 positive cells and an increase in CD24 and CD26 in HT29hTNFa carcinoma cells. Insignificant deviations in markers CD271, CD44, and CD166 were noticed in A375hTNFa, while CD133 and c-MET markers remained unchanged.
Subpopulations of CSCs are able to form 3D spheroids. Three of our four tested cell lines overexpressing TNFα (A375, HT29, HCT116) were able to form melanospheres or colonospheres in similar appearance, quantity, and size as their parental counterparts (Additional file 4). However, melanoma cells M4Beu were not able to grow in 3D spheres in given conditions [30].
The specific role of TNFα in stimulation the TRAIL or IL6 gene overexpression was confirmed by exposing cells to TNFR1 inhibitor zafirlukast. Inhibition of TNFR1 by this component resulted in a progressive significant decrease of TRAIL expression in colorectal carcinoma cells HT29hTNFa 2 and 4 h post-treatment (Additional file 5a). In parental melanoma cells A375, zafirlukast itself, surprisingly, dramatically increased expression of TNFα mRNA (up to 100 times) and also increased IL6 expression (Additional file 5c-e). Its inhibitory effect was observed firstly 4 h post-treatmentand was less evident in

Discussion
One of our major findings is that the overexpression of TNFα in engineered colorectal carcinoma and melanoma cell lines is not linked with significant affection of the subpopulation of CSCs in vitro. Monitored CSCs-surface markers, associated with stemness, resistance, tumor progression, adhesion, and invasion, were find to be not significantly up-or downregulated and TNFα makes cells only slightly more positive for these markers (CD166 and CD271 in melanoma; CD24 and CD26 in carcinoma) (Additional file 3). According to works of Storci et al. and Liu et al. [15,16], treatment of tumor cells with TNFα increased CSCs subpopulation in breast carcinoma cell line (i.e. CD44+, ALDH+ cells, and mammosphere counts). Our findings did not show similar changes in melanoma and colorectal carcinoma cells and the mRNA expression of CSCs-related genes (OCT4, SOX2, NANOG, CD133) was not significantly changed. We can also demonstrate unchanged ability to grow in 3D cultures and form in vitromelanospheres and colonospheres under the TNFα overexpression in vitro. The ability to generate spheres in suspension culture is attributed to CSCs-subpopulation, known also as tumorinitiating cells, which are responsible for tumor formation and relapse. We can conclude, that TNFα overexpression in our cancer cells was not able to hit CSCs subpopulation in vitro and is not responsible for the loss of tumorigenic potential of engineered cells in vivo.
However, we can demonstrate a significant decrease in ALDH activity in vitro. Aldehyde dehydrogenase ALDH is a critical component of the oxidative stress response and detoxification, overexpressed in various tumors, promoting chemoresistance, and considered as an important CSCs marker [31]. We observed a decrease in ALDH activity up to 50%, independently of the fact, that TNFα increases ROS production. This is in contrast to the findings of Moreb et al. [32] and Liu et al. [16], showing increased both ALDH mRNA and ALDH protein activity in human bone marrow cells and malignant cells treated with TNFα, respectively. Based on our experiments with TNFR1 inhibitor zafirlukast, we can conclude that ALDH activity is (i) not affected directly by addition of recombinant TNFα protein, but (ii) in engineered cells overexpressing TNFα, the ALDH decrease is probably caused indirectly by unknown mechanism. Despite decreased ALDH positivity, flow cytometry measurements, and spheroid formation assay did not indicate affected subpopulation of CSCs. The issue of decreased ALDH activity under the stable overexpression of TNFα needs deeper investigation because there are only a few published studies till today.
Under the TNFα overexpression, the mRNA of two important genes was significantly upregulated: proinflammatory cytokine IL6 in melanoma cells A375hTNFa, and pro-apoptotic ligand TRAIL in carcinoma cells HT29hTNFa. Overexpression of TRAIL gene in carcinoma cells explains the increase of caspase induction in HT29hTNFa in vitro. In melanoma cells, TNFα overexpression accompanied by the secretion of potent cytokine IL6 will be probably able to induce a strong inflammatory response in vivo. Since IL6 increases melanoma invasiveness and elevated levels of IL6 are linked with worse prognosis in non-responding patients [33,34], resulting effect of TNFα overexpression can be also adverse.
In our study, engineered malignant melanoma lines A375hTNFa and M4BeuhTNFa have displayed increased autophagy on day 3, followed by premature senescence on day 6. Both processes might be interconnected [19], following earlier apoptosis induction and deregulation of mitochondrial functions (Fig. 7). These processes can have a positive tumor-suppressive effect. It is known, that TNFα triggers premature senescence in various cell types, such as endothelial, epithelial, and leukemic cells [35,36] and here we can confirm the senescence induction also in malignant melanoma cells. Autophagy activation after TNFα treatment was previously observed in osteoblasts [37]. However, the senescence was not induced in colorectal carcinoma cells HT29hTNFa and HCT116hTNFa suggesting the two different mechanisms of TNFα action in carcinoma cells and in melanoma cells (Fig. 7). Overexpression of IL6 can also represent an explanation for senescence induction in melanoma because IL6 is a known initiator of senescence [38] and an important component of SASP [39,40]. On the other hand, significant upregulation of the TRAIL gene was reported also in human MSCs treated with TNFα. These MSCs exerted tumor-suppressive properties on breast cancer xenografts [8].
Different mitochondrial metabolism of cancer cells, known as the Warburg effect, distinguishes tumor cells from normal cells [41] and is considered as possible target of anticancer therapy. We documented altered mitochondrial status of malignant cells under the long term overexpression of TNFα: lowered ATP production and lowered mitochondrial mass. This is in accordance with several studies [24,25] showing altered mitochondrial metabolism and increased mitochondrial fragmentation in liver cells and adipocytes after TNFα treatment. The mitochondrial membrane potential of engineered TNFαoverexpressing cells remained unchanged in our study. Since the level of the mitochondrial mass is decreased in TNFα-tumor cells, we can also speculate, that there can be some increase of mitochondrial activity. Depending on energetic needs and stress stimuli, also mitochondrial morphology is continuously changing. Cancer cells display more shortened mitochondria than normal cells and the fragmentation is also more apparent after stress stimuli [42]. A study of Maeda et al. describes increased mitochondrial fission/fragmentation and release of intact mitochondria from the TNFα-treated human leukemia cells during programmed necrosis (necroptosis) and sterile inflammation [43]. In our TNFα-engineered cells, we have demonstrated similar altered mitochondrial morphologymore rounded and condensed mitochondria and less visible tubular network in comparison to their parental counterpart. Fig. 7 Possible relationships between TNFα overexpression, apoptosis, autophagy, mitochondrial status and senescence in engineered melanoma cells A375hTNFa. Overexpression of TNFα induces weak apoptosis activation on day 1-2 and most of the cells enter survival/inflammation pathway. TNFα induces ROS production, stress and fragmentation of mitochondria. It is manifested as a mild uncoupler and causes decreased levels of intracellular ATP. Autophagy, and probably also mitophagy, are activated on day 3 and can bring mitochondrial dysfunctions too. And mitochondrial dysfunctions can be a cause of mitophagy. ALDH activity is reduced to 50% and probably cannot ensure complete detoxification of products of oxidative stress. Overexpression of TNFα induces significant overexpression of IL6, known inducer of JAK/STAT3 signalling pathway, inducer of senescence and component of SASP. Finally, autophagy, IL6, mitochondrial dysfunctions and oxidative stress caused by TNFα lead to premature senescence in malignant melanoma cells A375hTNFa. IL6interleukin 6, ALDHaldehyde dehydrogenase, ROSreactive oxygen species, SASPsenescence associated phenotype, JAK/STAT3signalling pathway

Conclusions
Our work reports the impact of TNFα on cancer cells of different originnon-epithelial malignant melanoma cells of neural crest origin and colorectal carcinoma cell lines of epithelial origin. TNFα acts differently in these cells, confirming its pluripotency and indicating two possible ways of action. In melanoma cells, inflammation/ survival pathway is supported by IL6 overexpression, and activation of autophagy followed by premature senescence is initiated. Deregulation of mitochondria and changes in mitochondrial morphology were noticed in both cancer cell types. Carcinoma cells are stimulated to overexpress pro-apoptotic gene TRAIL and they avoid to activate other inflammatory mediators. But the final effect of TNFα is mild in vitro, limited by the availability of its receptors TNFR1 and TNFR2 and presumably predominant activation of pro-survival pathway NF-κB. Despite such high overexpression of TNFα protein in engineered tumor cells, the subpopulation of CSCs responsible for tumor growth initiation remained unaffected, not increased or decreased, and is not directly linked with the loss of tumorigenic potential.
Additional file 2: Figure S2. Mitochondrial DNA content is not changed in TNFα overexpressing melanoma (a) and colorectal carcinoma cells (b). Mitochondrial DNA content (mtDNA) represented by gene for 16S rRNA was normalized to a nuclear DNA (nDNA) represented by β2microglobulin gene; quantitative PCR, triplicates ± SDs.
Additional file 3: Figure S3. Cancer stem cell-related markers remained unchanged under the overexpression of TNFα gene in melanoma (a) and colorectal carcinoma cells (b, c). Flow cytometry analysis; cells overexpressing TNFα (red line) and parental cells (black line) stained with specific anti-human antibodies against CSCs markers; isotype control antibodies as staining controls of TNFα overexpressing cells (blue line) and parental cells (grey line).
Additional file 4: Figure S4. Spheroid formation ability is not affected under the TNFα overexpression. Spheroids of melanoma cells A375 (melanospheres) were grown in passage 0 for 4 days; spheroids of colorectal carcinoma cells HT29 and HCT116 (colonospheres) were grown in passage 1 for 3 days. Colonospheres later quickly fused together into big spheres with length of more than 600 μm. (a) Lengths of spheres; bars represent medians, n = 20-30, Mann-Whitney test; (b) representative light microscope images, scale bar: 100 μm.
Additional file 5: Figure S5. Inhibitor of TNFR1 receptor zafirlukast (ZAF) inhibits (a) TRAIL gene overexpression in engineered colorectal carcinoma cells HT29hTNFa and (d) IL6 gene expression in malignant melanoma cells A375hTNFa (highlighted with red line). (e) Zafirlukast itself also significantly increases TNFα gene expression in parental cells A375, so its inhibitory effect on IL6 overexpression (d) is evident firstly after 4 h post-treatment. (a, c, d) Overexpression of TRAIL and IL6 confirmed in TNFα overexpressing cells and in control cells treated with recombinant TNFα (100 ng/ml). Cells were treated with zafirlukast (100 μM) for 1 h at 37°C; recombinant TNFα (100 ng/ml) was then added to the control samples for 2 and 4 h (2 h, 4 h) post-zafirlukast treatment and then all cells were immediately harvested for reverse quantitative PCR for TRAIL, IL6 and TNFα gene. Expression normalized to HPRT1 reference gene; values are mean of triplicates ± SDs; unpaired t-test was used to statistical analysis. Pictures (c) and (d) represent independent experiments.