Table 2 Average perturbation values of significantly perturbed genes in each sample type
Sample type | Gene set | Perturbation µ | Perturbation ϭ | Samples |
|---|---|---|---|---|
Stage 1 tumor | Down-regulated | 0.32 | 0.16 | 10 |
Up-regulated | -0.26 | 0.19 | 10 | |
Stage 2 tumor | Down-regulated | 0.26 | 0.20 | 10 |
Up-regulated | -0.19 | 0.20 | 10 | |
Stage 3 tumor | Down-regulated | 0.30 | 0.18 | 10 |
Up-regulated | -0.23 | 0.19 | 10 | |
Stage 4 tumor | Down-regulated | 0.34 | 0.20 | 10 |
Up-regulated | -0.27 | 0.20 | 10 | |
Normal thyroid (TCGA) | Down-regulated | 0.04 | 0.15 | 10 |
Up-regulated | -0.18 | 0.19 | 10 | |
Normal thyroid (GTEx) | Down-regulated | 0.03 | 0.16 | 10 |
Up-regulated | -0.12 | 0.18 | 10 |