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Table 3 List of taxa that differ significantly between healthy and tumor samples

From: Microbiome composition indicate dysbiosis and lower richness in tumor breast tissues compared to healthy adjacent paired tissue, within the same women

Taxa

Significance

Log2 fold change

Adjusted p-value

Phylum

   Actinobacteria

****

2.28

1.36e-11

   Firmicutes

*

-0.89

0.047

Class

   Actinobacteria (Class)

****

2.51

3.23e-12

   Alphaproteobacteria

*

-1.51

0.015

Order

   Propionibacteriales

****

2.53

2.06e-11

   Aeromonadales

****

26.23

1.99e-19

   Selenomonadales

****

25.6

2.17e-18

Family

   Propionibacteriaceae

****

2.54

7.24e-08

   Aeromonadaceae

****

25.18

4.60e-21

Genus

   Propionibacterium

****

2.36

3.39e-06

   Aeromonas

****

26.32

1.00e-19

Species

   Variovorax sp. WO3

****

25.13

1.28e-18

   Moraxella sp. S2

****

-25.4

1.42e-17

   Pseudomonas sp. PS9 (2007)

****

25.14

4.39e-21

   Propionibacterium sp.

Enrichment culture clone MRHull-FeSM-11E

****

27.3

2.28e-35

   Pseudomonas sp. IMER-A2-21

****

26.39

9.32e-22

   Pseudomonas brenneri

****

-25.87

4.13e-18

   Neisseria elongata

****

25.00

4.22e-17

   Propionibacterium acnes

***

1.91

0.006

  1. The analysis was performed by comparing healthy and tumor samples, consequently if the log2 fold change is positive, the taxon counts are higher in healthy than in tumor samples. Significance level refers to adjusted p-values: * ≤ 0.05, ** ≤ 0.01, *** ≤ 0.001, **** ≤ 0.0001