From: Impacts of the SOAT1 genetic variants and protein expression on HBV-related hepatocellular carcinoma
SNP | rs10753191 | rs3753526 | rs13306731 | |
Positiona | 179,312,752 | 179,319,541 | 179,320,578 | |
REF | C | C | A | |
ALT | T | G | G | |
Amino acid change | V323V | L475L | Q526R | |
TF bindingb | RFX5 | No | No | |
MAFc in CHBd | 0.403 | 0.408 | 0.306 | |
MAF in CEUd | 0.091 | 0.040 | 0.040 | |
MAF in YRId | 0.361 | 0.116 | 0 | |
MAF in the control group | 0.394 | 0.394 | 0.316 | |
Hardy-Weinberg Equilibrium P value in the control group | 0.197 | 0.197 | 0.790 | |
Haplotype | This Study | CHB | CEU | YRI |
CCA | 0.628 | 0.592 | 0.909 | 0.639 |
TGG | 0.303 | 0.306 | 0.040 | 0.000 |
TGA | 0.069 | 0.097 | 0.000 | 0.116 |
CGA | 0.000 | 0.005 | 0.000 | 0.000 |
TCA | 0.000 | 0.000 | 0.051 | 0.245 |