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Table 3 Implemented variant classification criteria of detected germ-line mutations

From: The emerging clinical relevance of genomic profiling in neuroendocrine tumours

Patient

Gene

Variant (amino acid change)

ACMG criteria

(doi: 10.1038/gim.2015.30)

P11

KIT

M541L (Heterozygote)

PM2, BP4, BP6

SDHD

G12S (Heterozygote)

PP2, BS1, BS3, BP4, BP6

P14

SDHB

G19FS*57 (Heterozygote)

PVS1, PM1, PM2

P15

PDGFRA

S66R (Heterozygote)

PM2, BP1, BP4

P17

RET

G691S (Heterozygote)

PP2, BA1, BS3, BP4

P18

RET

G691S (Heterozygote)

PP2, BA1, BS3, BP4

P19

RET

G691S (Heterozygote)

PP2, BA1, BS3, BP4

P22

RET

G691S (Heterozygote)

PP2, BA1, BS3, BP4

KIT

A431E (Heterozygote)

PM1, PM2, BP4

P24

RET

G691S (Homozygote)

PP2, BA1, BS3, BP4

RET

A1051V (Heterozygote)

PM1, PP2, PP3

P25

RET

G691S (Heterozygote)

PP2, BA1, BS3, BP4

P29

KIT

R946* (Heterozygote)

PVS1, PP3, BS2

P30

RET

A96V (Heterozygote)

PM2, PP2, BP4

P34

KIT

M541L (Heterozygote)

PM2, BP4, BP6

P35

SDHC

R72H (Heterozygote)

PM1, PM2, PP3

  1. PVS1 Pathogenic Very Strong, PP2 and PP3 Pathogenic Supporting, PM1 and PM2 Pathogenic Moderate, BP1, BP4 and BP6 Benign Supporting, BA1and BS3 Benign Strong
  2. * symbol were used to indicate stop codon formation as recommended in HUGO Gene Nomenclature Committee standards