Table 2 Biomarkers for prediction of LUAD and LUSC subtypes
ID_REF | Chr. | Gene name | Genetic location | Epigenetic location | |
|---|---|---|---|---|---|
LUSC-C1 | cg00894870 | 1 | MRTO4; KIAA0090 | Body; TSS1500 | Island |
cg03041700 | 1 | ATAD3B | Body | Island | |
cg04738309 | 5 | C5orf13 | Body | Island | |
cg08356572 | 6 | TRIM27 | 1stExon | Island | |
cg09844983 | 1 | RPA2 | Body | Island | |
cg11416447 | 7 | DMTF1 | TSS200 | N_Shore | |
cg15987088 | 3 | GHSR | TSS200 | Island | |
cg17152757 | 3 | GHSR | TSS200 | Island | |
cg22627950 | 7 | TMED4 | TSS1500 | Island | |
cg24599434 | 3 | GHSR | TSS200 | Island | |
LUSC-C3 | cg00431236 | 2 | ACP1; SH3YL1 | 1stExon; TSS1500 | Island |
cg00894870 | 1 | MRTO4; KIAA0090 | Body; TSS1500 | Island | |
cg02074191 | 5 | PCDHGA1; PCDHGA2; PCDHGA3; PCDHGA4; PCDHGA5; PCDHGA6; PCDHGA7; PCDHGA8; PCDHGB1; PCDHGB2; PCDHGB3; PCDHGB4; PCDHGB5 | Body; Body; Body; Body; Body; Body; Body; Body; Body; Body; Body; Body; 1stExon | Island | |
cg02590972 | 2 | RPL37A | TSS200 | N_Shore | |
cg03041700 | 1 | ATAD3B | Body | Island | |
cg04417954 | 15 | CRTC3 | Body | Island | |
cg08356572 | 6 | TRIM27 | 1stExon | Island | |
cg11416447 | 7 | DMTF1 | TSS200 | N_Shore | |
cg12065562 | 5 | PCDHB18 | Body | Island | |
cg22627950 | 7 | TMED4 | TSS1500 | Island | |
LUAD | ANLN | 7 | |||
CCNA2 | 4 | ||||
CDCA5 | 11 | ||||
CKAP2L | 2 | ||||
DLGAP5 | 14 | ||||
KIF4A | X | ||||
KPNA2 | 17 | ||||
SHCBP1 | 16 | ||||
TPX2 | 20 | ||||
cg20097219 | 17 | TBC1D16 | Body | S_Shore |