Table 1 Deregulated miRNA in breast cancer cell lines compared to normal HB4A cells
Microarray ID | Probe sequence | MIMAT ID | miRbase (rel. 22) | Validation information [*] |
|---|---|---|---|---|
hsa-miR-141 | CCATCTTTACCAGACA | MIMAT0000432 | hsa-miR-141-3p | experimental; cloned |
hsa-miR-141* | TCCAACACTGTACTGGAA | MIMAT0004598 | hsa-miR-141-5p | experimental; cloned |
hsa-miR-148a | ACAAAGTTCTGTAGTGCACT | MIMAT0000243 | hsa-miR-148a-3p | experimental; cloned, Northern |
hsa-miR-149 | GGGAGTGAAGACACGGAG | MIMAT0000450 | hsa-miR-149-5p | experimental; cloned |
hsa-miR-182 | AGTGTGAGTTCTACCAT | MIMAT0000259 | hsa-miR-182-5p | experimental; cloned |
hsa-miR-183 | AGTGAATTCTACCAGTGCCA | MIMAT0000261 | hsa-miR-183-5p | experimental; cloned |
hsa-miR-183* | TTATGGCCCTTCGGT | MIMAT0004560 | hsa-miR-183-3p | experimental; cloned |
hsa-miR-193a-3p | ACTGGGACTTTGTAGGC | MIMAT0000459 | hsa-miR-193a-3p | experimental; cloned |
hsa-miR-193b | AGCGGGACTTTGAGGG | MIMAT0002819 | hsa-miR-193b-3p | experimental; array-cloned, cloned |
hsa-miR-200a | ACATCGTTACCAGACAGT | MIMAT0000682 | hsa-miR-200a-3p | experimental; cloned |
hsa-miR-200a* | TCCAGCACTGTCCGGT | MIMAT0001620 | hsa-miR-200a-5p | experimental; cloned |
hsa-miR-200b | TCATCATTACCAGGCAG | MIMAT0000318 | hsa-miR-200b-3p | experimental; Northern, cloned |
hsa-miR-200b* | TCCAATGCTGCCCAG | MIMAT0004571 | hsa-miR-200b-5p | experimental; cloned |
hsa-miR-200c | TCCATCATTACCCGG | MIMAT0000617 | hsa-miR-200c-3p | experimental; cloned, Northern |
hsa-miR-200c* | CCAAACACTGCTGGGTA | MIMAT0004657 | hsa-miR-200c-5p | experimental; cloned |
hsa-miR-203 | CTAGTGGTCCTAAACATT | MIMAT0000264 | hsa-miR-203a-3p | experimental; cloned |
hsa-miR-205 | CAGACTCCGGTGGAAT | MIMAT0000266 | hsa-miR-205-5p | experimental; cloned |
hsa-miR-210 | TCAGCCGCTGTCACAC | MIMAT0000267 | hsa-miR-210-3p | experimental; cloned, Illumina |
hsa-miR-26a | AGCCTATCCTGGATT | MIMAT0000082 | hsa-miR-26a-5p | experimental; cloned, Northern |
hsa-miR-26b | ACCTATCCTGAATTACTTGA | MIMAT0000083 | hsa-miR-26b-5p | experimental; cloned, Northern |
hsa-miR-34a | ACAACCAGCTAAGACACTGC | MIMAT0000255 | hsa-miR-34a-5p | experimental; cloned |
hsa-miR-34a* | AGGGCAGTATACTTGCTG | MIMAT0004557 | hsa-miR-34a-3p | experimental; cloned |
hsa-miR-363 | TACAGATGGATACCGTGCA | MIMAT0000707 | hsa-miR-363-3p | experimental; array-cloned, cloned |
hsa-miR-365 | ATAAGGATTTTTAGGGGCATTA | MIMAT0000710 | hsa-miR-365a-3p | experimental; cloned, array-cloned |
hsa-miR-375 | TCACGCGAGCCGAAC | MIMAT0000728 | hsa-miR-375-3p | experimental; cloned |
hsa-miR-425 | TCAACGGGAGTGATCGTG | MIMAT0003393 | hsa-miR-425-5p | experimental; cloned |
hsa-miR-429 | ACGGTTTTACCAGACAGTA | MIMAT0001536 | hsa-miR-429 | experimental; cloned |
hsa-miR-652 | CACAACCCTAGTGGC | MIMAT0003322 | hsa-miR-652-3p | experimental; Microarray, SAGE, cloned |
hsa-miR-9* | ACTTTCGGTTATCTAGCTT | MIMAT0000442 | hsa-miR-9-3p | experimental; cloned |
hsa-miR-934 | CCAGTGTCTCCAG | MIMAT0004977 | hsa-miR-934 | experimental; cloned |
hsa-miR-96 | AGCAAAAATGTGCTAGTGCCA | MIMAT0000095 | hsa-miR-96-5p | experimental; cloned |
hsa-miR-99a | CACAAGATCGGATCTACGG | MIMAT0000097 | hsa-miR-99a-5p | experimental; cloned |