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Table 5 Key pathways regulated by CD82 in prostate cancer cells from top 100 significant genes from all three data array sets

From: Gene expression analysis of human prostate cell lines with and without tumor metastasis suppressor CD82

Gene Name

Gene ID

Gene Description

PC3–57 Array

(logFC)

PC3–29 Array

(logFC)

PrEC-31 Array

(logFC)

Cell proliferation and angiogenesis

 ANXA3

NM_002754.3

Homo sapiens annexin A3

+ 0.504

+ 1.302

+ 1.218

 MAPK3

NM_002754

Homo sapiens mitogen-activated protein kinase 13

+ 0.715

+ 0.874

+ 0.816

 LXN

NM_020169

Homo sapiens latexin

+ 2.255

+ 1.220

+ 1.323

 RUNX3

NM_001031680

Homo sapiens runt-related transcription factor 3, transcript variant 1

+ 2.539

+ 1.446

−1.140

 PIK3CA

NM_006218.2

Homo sapiens phosphoinositide-3-kinase, catalytic, alpha polypeptide

−0.648

− 0.903

+ 0.523

 CDKN1C

NM_000076

Homo sapiens cyclin-dependent kinase inhibitor 1C (p57, Kip2)

−1.105

− 1.319

− 3.227

 BST2

NM_004335

Homo sapiens bone marrow stromal cell antigen 2

−4.338

−1.592

+ 0.926

Migration & Invasion

 TFF3

NM_003226

Homo sapiens trefoil factor 3 (intestinal)

+ 3.835

+ 2.071

+ 0.926

 CXCL2

NM_002089

Homo sapiens chemokine (C-X-C motif) ligand 2

−1.521

−1.422

+ 1.699

Cell Apoptosis

 LCK

NM_005356

Homo sapiens lymphocyte-specific protein tyrosine kinase, transcript variant 2

+ 1.377

+ 0.930

−0.777

 STEAP1

NM_012449

Homo sapiens six transmembrane epithelial antigen of the prostate 1

−1.498

−1.912

–

Cell cycle

 RUNX3

NM_001031680

Homo sapiens runt-related transcription factor 3, transcript variant 1

+ 2.539

+ 1.446

−1.140

 CDKN1C

NM_000076

Homo sapiens cyclin-dependent kinase inhibitor 1C (p57, Kip2)

−1.105

−1.319

−3.227

 LCK

NM_005356

Homo sapiens lymphocyte-specific protein tyrosine kinase, transcript variant 2

+ 1.377

+ 0.930

−0.776

 FGF13

NM_004114.3

Homo sapiens fibroblast growth factor 13

− 0.765

− 3.955

–

Signal transduction pathways

 MAPK13

NM_002754

Homo sapiens mitogen-activated protein kinase 13

+ 0.715

+ 0.874

+ 0.816

 LCK

NM_005356

Homo sapiens lymphocyte-specific protein tyrosine kinase, transcript variant 2

+ 1.377

+ 0.930

−0.777

 PIK3CA

NM_006218.2

Homo sapiens phosphoinositide-3-kinase, catalytic, alpha polypeptide

−0.648

− 0.903

+ 0.523

 CXCL2

NM_002089

Homo sapiens chemokine (C-X-C motif) ligand 2

−1.521

−1.422

+ 1.699

 FGF13

NM_004114.3

Homo sapiens fibroblast growth factor 13

− 0.765

− 3.955

–

 WNT5A

NM_003392.3

Homo sapiens wingless-type MMTV integration site family, member 5A

− 0.577

− 1.094

+ 1.634

 PPFIA4

NM_015053

Homo sapiens protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4

−1.192

− 1.649

+ 2.211

Metabolic pathways

 TFF3

NM_003226

Homo sapiens trefoil factor 3 (intestinal)

+ 3.835

+ 2.071

+ 0.926

 MMP23B

NM_006983

Homo sapiens matrix metallopeptidase 23B

+ 0.987

+ 0.889

–