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Table 6 Gene sets enriched in phenotype high

From: Increased E2F2 predicts poor prognosis in patients with HCC based on TCGA data

MSigDB collection Gene set name NES NOM p-val FDR q-val
c2.cp.kegg.v7.0.symbols.gmt[Curated] KEGG_CELL_CYCLE 2.400 0.000 0.000
KEGG_RNA_DEGRADATION 2.274 0.000 0.001
KEGG_PYRIMIDINE_METABOLISM 2.273 0.000 0.001
KEGG_BASE_EXCISION_REPAIR 2.224 0.000 0.002
KEGG_AMINOACYL_TRNA_BIOSYNTHESIS 2.163 0.000 0.004
KEGG_DNA_REPLICATION 2.149 0.000 0.005
KEGG_P53_SIGNALING_PATHWAY 2.116 0.000 0.005
KEGG_NUCLEOTIDE_EXCISION_REPAIR 2.101 0.000 0.006
KEGG_UBIQUITIN_MEDIATED_PROTEOLYSIS 2.012 0.004 0.012
KEGG_CITRATE_CYCLE_TCA_CYCLE 1.995 0.006 0.013
  1. NES Normalized enrichment score, NOM Nominal, FDR False discovery rate. Gene sets with NOM p-val < 0.05 and FDR q-val < 0.05 are considered as significant.