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Table 7 Functional enrichment analysis for pCR and RELAPSE models

From: Prediction of prognostic signatures in triple-negative breast cancer based on the differential expression analysis via NanoString nCounter immune panel

Category

Term

Genes

aP Value

bpCR

 GOTERM_BP_DIRECT

GO:0006955 ~ immune response

IL2RA, CCL20, HAMP, CD1A, CCL5, CD7

1.95E-07

 UP_SEQ_FEATURE

disulfide bond

FCER1A, IL2RA, CCL20, HAMP, CD1A, CCL5, SELE, CD7

1.36E-06

 UP_SEQ_FEATURE

signal peptide

FCER1A, IL2RA, CCL20, HAMP, CD1A, CCL5, SELE, CD7

3.57E-06

 UP_KEYWORDS

Disulfide bond

FCER1A, IL2RA, CCL20, HAMP, CD1A, CCL5, SELE, CD7

3.58E-06

 UP_KEYWORDS

Signal

FCER1A, IL2RA, CCL20, HAMP, CD1A, CCL5, SELE, CD7

1.37E-05

 KEGG_PATHWAY

hsa04640:Hematopoietic cell lineage

IL2RA, CD1A, CD7

0.002295

 KEGG_PATHWAY

hsa04668:TNF signaling pathway

CCL20, CCL5, SELE

0.003452

 KEGG_PATHWAY

hsa04060:Cytokine-cytokine receptor interaction

IL2RA, CCL20, CCL5

0.016968

 KEGG_PATHWAY

hsa05323:Rheumatoid arthritis

CCL20, CCL5

0.074368

cRELAPSE

 UP_SEQ_FEATURE

disulfide bond

FCER1A, IL2RA, CCL8, GZMB, CCL5, CCL7, EDNRB, IL17B, TNFSF13B, CLEC4E, TGFBI, CSF2RB, SELE

8.75E-11

 UP_KEYWORDS

Disulfide bond

FCER1A, IL2RA, CCL8, GZMB, CCL5, CCL7, EDNRB, IL17B, TNFSF13B, CLEC4E, TGFBI, CSF2RB, SELE

4.58E-10

 UP_SEQ_FEATURE

signal peptide

FCER1A, EDNRB, IL17B, IL2RA, TGFBI, CCL8, CSF2RB, GZMB, CCL5, SELE, CCL7

7.83E-07

 UP_KEYWORDS

Cytokine

IL17B, TNFSF13B, CCL8, CCL5, CCL7

3.29E-06

 GOTERM_BP_DIRECT

GO:0006954 ~ inflammatory response

IL17B, IL2RA, CCL8, CCL5, SELE, CCL7

3.97E-06

 UP_KEYWORDS

Signal

FCER1A, EDNRB, IL17B, IL2RA, TGFBI, CCL8, CSF2RB, GZMB, CCL5, SELE, CCL7

4.97E-06

 UP_KEYWORDS

Glycoprotein

FCER1A, EDNRB, IL17B, IL2RA, CLEC4E, TNFSF13B, CSF2RB, GZMB, CCL5, SELE, CCL7

1.17E-05

 KEGG_PATHWAY

hsa04060:Cytokine-cytokine receptor interaction

IL17B, IL2RA, TNFSF13B, CCL8, CSF2RB, CCL5, CCL7

7.28E-07

 KEGG_PATHWAY

hsa04062:Chemokine signaling pathway

CCL8, CCL5, CCL7

0.034067

  1. Only annotations with a FDR < 0.05 after multiple hypothesis testing are presented from DAVID outputs
  2. a: Original P value (FDR < 0.05) calculated in DAVID