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Table 4 qPCR validation of differentially expressed genes

From: Global targetome analysis reveals critical role of miR-29a in pancreatic stellate cell mediated regulation of PDAC tumor microenvironment

Gene Symbol RNAseq qRT-PCR
logFC p value FDR logFC
Downregulated
 IGF1a −1.59 0.00 0.01 −1.48
 COL5A3a −1.50 8.80E-07 0.00 −1.32
 CLDN1a −1.49 0.00 0.01 −1.89
 E2F7a −1.49 1.21E-06 0.00 −2.12
 MYBL2a −1.35 1.42E-05 0.00 −1.92
 TET3a −1.24 3.92E-05 0.00 −1.13
 PCDH9a −1.2 3.02E-05 0.00 −1.18
 EMP1a −1.19 4.09E-06 0.00 − 2.18
 ITGA6a −1.18 0.00 0.012 −2.01
 XXYLT1a −1.13 7.18E-05 0.00 −1.08
 BCL7Aa −1.12 0.00 0.02 −1.80
 ADAMTS2a −1.11 2.52E-05 0.00 −1.08
 DCLK3a −1.10 0.00 0.02 −1.32
 LAMC1a −1.09 9.16E-07 0.00 −1.32
 KIAA1549La −1.07 1.43E-05 0.00 −1.12
 PRMT6a −1.07 3.82E-05 0.00 −1.19
 KDELC1a −1.03 6.87E-06 0.00 −1.83
 NRASa −1.01 2.61E-05 0.00 −1.15
 FSTL1a −1.0 1.16E-06 0.00 −2.3
 PPP1R14C −3.54 0.00 0.02 −2.58
 ESM 1 −1.97 0.00 0.01 −1.41
 BCL2 −1.90 0.00 0.03 −1.30
 PLAU −1.51 4.93E-07 0.00 −2.17
 IL1B −1.26 9.42E-05 0.00 −2.88
 EXO1 −1.22 0.00 0.02 −1.62
 ITGA2 −1.10 4.23E-06 0.00 −2.17
 IQGAP3 −1.09 0.00 0.01 −1.20
 BLM −1.06 0.00 0.01 −1.04
 E2F1 −1.03 0.00 0.02 −1.20
 AURKB −1.02 5.01E-05 0.00 −1.92
Upregulated
 DPYSL3a 1.09 3.21E-06 0.00 1.01
 PYGM 3.58 0.00 0.01 3.64
 CXCL5 2.40 5.34E-07 0.00 1.98
 NEFL 1.98 0.00 0.02 1.26
 GNAO1 1.82 0.00 0.03 1.44
 TNFRSF10C 1.62 0.00 0.03 1.20
 HLA-DMA 1.51 0.00 0.03 2.06
 ITGA7 1.46 0.00 0.02 1.65
 FBXO32 1.41 1.06E-05 0.00 1.31
 PIK3AP1 1.31 8.41E-05 0.00 1.53
 HERC6 1.15 0.00 0.03 1.04
HIST1H1C 1.12 0.00 0.04 −1.18
 IGFBP3 1.06 5.82E-06 0.00 0.89
 HIST2H2BE 1.03 0.00 0.018 0.65
  1. amiR-29a direct targets