Skip to main content

Table 4 qPCR validation of differentially expressed genes

From: Global targetome analysis reveals critical role of miR-29a in pancreatic stellate cell mediated regulation of PDAC tumor microenvironment

Gene Symbol

RNAseq

qRT-PCR

logFC

p value

FDR

logFC

Downregulated

 IGF1a

−1.59

0.00

0.01

−1.48

 COL5A3a

−1.50

8.80E-07

0.00

−1.32

 CLDN1a

−1.49

0.00

0.01

−1.89

 E2F7a

−1.49

1.21E-06

0.00

−2.12

 MYBL2a

−1.35

1.42E-05

0.00

−1.92

 TET3a

−1.24

3.92E-05

0.00

−1.13

 PCDH9a

−1.2

3.02E-05

0.00

−1.18

 EMP1a

−1.19

4.09E-06

0.00

− 2.18

 ITGA6a

−1.18

0.00

0.012

−2.01

 XXYLT1a

−1.13

7.18E-05

0.00

−1.08

 BCL7Aa

−1.12

0.00

0.02

−1.80

 ADAMTS2a

−1.11

2.52E-05

0.00

−1.08

 DCLK3a

−1.10

0.00

0.02

−1.32

 LAMC1a

−1.09

9.16E-07

0.00

−1.32

 KIAA1549La

−1.07

1.43E-05

0.00

−1.12

 PRMT6a

−1.07

3.82E-05

0.00

−1.19

 KDELC1a

−1.03

6.87E-06

0.00

−1.83

 NRASa

−1.01

2.61E-05

0.00

−1.15

 FSTL1a

−1.0

1.16E-06

0.00

−2.3

 PPP1R14C

−3.54

0.00

0.02

−2.58

 ESM 1

−1.97

0.00

0.01

−1.41

 BCL2

−1.90

0.00

0.03

−1.30

 PLAU

−1.51

4.93E-07

0.00

−2.17

 IL1B

−1.26

9.42E-05

0.00

−2.88

 EXO1

−1.22

0.00

0.02

−1.62

 ITGA2

−1.10

4.23E-06

0.00

−2.17

 IQGAP3

−1.09

0.00

0.01

−1.20

 BLM

−1.06

0.00

0.01

−1.04

 E2F1

−1.03

0.00

0.02

−1.20

 AURKB

−1.02

5.01E-05

0.00

−1.92

Upregulated

 DPYSL3a

1.09

3.21E-06

0.00

1.01

 PYGM

3.58

0.00

0.01

3.64

 CXCL5

2.40

5.34E-07

0.00

1.98

 NEFL

1.98

0.00

0.02

1.26

 GNAO1

1.82

0.00

0.03

1.44

 TNFRSF10C

1.62

0.00

0.03

1.20

 HLA-DMA

1.51

0.00

0.03

2.06

 ITGA7

1.46

0.00

0.02

1.65

 FBXO32

1.41

1.06E-05

0.00

1.31

 PIK3AP1

1.31

8.41E-05

0.00

1.53

 HERC6

1.15

0.00

0.03

1.04

HIST1H1C

1.12

0.00

0.04

−1.18

 IGFBP3

1.06

5.82E-06

0.00

0.89

 HIST2H2BE

1.03

0.00

0.018

0.65

  1. amiR-29a direct targets