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Table 2 Focal Deletions identified by GISTIC 2.0 analysis. Regions are ordered by chromosome

From: Landscape of copy number aberrations in esophageal squamous cell carcinoma from a high endemic region of South Africa

cytoband

q value

wide peak boundaries

Size (kb)

Frequency (n = 51) (%)

Gene

1p36.32

4.4821e-06

chr1:2546230–3,101,761

555,531

26 (51)

ACTRT2

2p21

0.043569

chr2:42871145–43,761,298

890,153

10 (19.6)

ZFP36L2, THADA, LOC728819

4q35.1

0.0032739

chr4:184659448–185,070,554

411,106

24 (47)

ING2, C4orf41, RWDD4A

5q33.2

0.00026001

chr5:153410221–153,828,954

418,733

27 (53)

GALNT10, SAP30L

8q24.3

0.11261

chr8:140741552–141,656,154

914,602

6 (11.8)

CHRAC1, NIBP

10p15.3

0.000616

chr10:1166401–3,107,538

1941,137

34 (66.7)

ADARB2, C10orf109

11q25

7.4472e-10

chr11:133707909–134,452,384

744,475

34 (67)

B3GAT1

12p13.33

0.023341

chr12:417634–738,596

320,962

8 (15.7)

NINJ2, B4GALNT3

13q34

2.2677e-05

chr13:113562426–113,786,946

224,52

20 (39)

FAM70B

14q23.3

0.034764

chr14:64959313–66,072,039

1112,726

12 (23.5)

hsa-mir-625, FUT8

15q13.1

0.001437

chr15:25429109–26,306,775

877,666

30 (58.8)

OCA2, HERC2

22q13.33

4.0476e-05

chr22:49396414–49,482,863

86,449

28 (55)

ARSA