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Table 2 Differentially expressed tissue miRNAs across clinical parameters as measured by sequencing and microarray

From: Comprehensive transcriptomic analyses of tissue, serum, and serum exosomes from hepatocellular carcinoma patients

Comparison miRNA Fold change sequencing Adjusted P-value sequencing Fold change microarray Adjusted P-value microarray
Transplantation vs Resection in Tumor Tissue
  hsa-miR-107 −0.902 0.041 −0.317 0.844
hsa-miR-17-5p −1.179 0.041 −0.439 0.844
hsa-miR-339-5p −1.255 0.041 NA NA
hsa-miR-505-3p −1.077 0.042 −0.170 0.966
hsa-miR-20a-5p −1.150 0.043 −0.364 0.844
hsa-miR-532-3p −1.276 0.043 −1.157 0.841
hsa-miR-1248 −1.847 0.049 NA NA
hsa-miR-93-5p −0.949 0.049 −0.168 0.941
Transplantation vs Resection in Normal Tissue
  hsa-miR-224-5p 1.328 0.005 0.689 0.584
hsa-miR-451a −1.977 0.005 0.205 0.817
hsa-miR-193b-3p −1.202 0.011 0.367 0.539
hsa-miR-19b-3p −0.972 0.015 −0.114 0.821
hsa-miR-16-5p −0.989 0.015 −0.023 0.951
hsa-miR-543 1.451 0.028 NA NA
hsa-miR-345-5p −0.767 0.028 NA NA
hsa-miR-324-5p −1.354 0.028 0.581 0.410
hsa-miR-101-5p −1.298 0.030 NA NA
hsa-miR-17-3p −0.922 0.030 0.412 0.582
hsa-miR-675-3p −1.374 0.032 NA NA
hsa-miR-485-3p 1.206 0.032 NA NA
hsa-miR-128-3p 1.087 0.032 0.504 0.535
hsa-miR-195-3p 0.887 0.032 NA NA
hsa-miR-146b-5p 0.710 0.038 0.420 0.572
hsa-miR-15b-3p −1.170 0.038 NA NA
hsa-miR-652-3p −1.019 0.038 0.664 0.503
hsa-miR-660-3p −1.126 0.047 NA NA
Cirrhosis vs Non-Cirrhosis in Normal Tissue
  hsa-miR-146b-5p 1.027 0.003 1.128 0.031
Cirrhosis vs Non-Cirrhosis in Tumor Tissue
  hsa-miR-141-3p −2.886 0.003 NA NA
  1. “Comparison” shows the clinical parameters between which the comparison was performed; “miRNA” shows the miRBase miRNA name; “Fold Change Sequencing” shows the log2 fold change value for the miRNA in the sequencing data; “Adjusted P-value Sequencing” shows the Benjamini-Hochberg asdjusted p-value in the sequencing data. “Fold Change Microarray” shows the log2 fold change value for the miRNA in the microarray data; “Adjusted P-value Microarray” shows the Benjamini-Hochberg asdjusted p-value in the microarray data. “NA” indicates that the miRNA is not detected. Positive fold change indicates upregulation in transplantation or cirrhosis for the two comparisons