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Fig. 5 | BMC Cancer

Fig. 5

From: Substantial batch effects in TCGA exome sequences undermine pan-cancer analysis of germline variants

Fig. 5

Survival curves for gene sets differing by their sensitivity to batch effect. Kaplan-Meier estimate survival curves tested on 10,129 samples from the MSK-IMPACT clinical sequenced cohort (MSKCC [29]). The analysis applies to genes from a collection of 104 CPGs annotated by COSMIC. a Top 10 genes exhibiting maximal sensitivity to the batch effect. b Bottom 10 genes exhibiting minimal sensitivity to the batch effect. Additional file 1: Table S3_104 CPG lists the 104 genes along with their batch effect measure

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