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Table 3 Joint stem-loop and quadruplex-based ML models

From: Tissue-specific impact of stem-loops and quadruplexes on cancer breakpoints formation

 

Stem-loops and quadruplex-based models

Cancer type

Median test AUC

Percentage of datasets with the mean test AUC confidence interval not containing 0.5

Median lift of recall

Percentage of datasets with lift of recall higher than 1.5

skin

0.56

100

1.37

39

overall

0.56

100

1.67

57

prostate

0.55

100

1.21

4

uterus

0.57

100

2.00

68

bone

0.68

100

3.17

100

brain

0.59

100

1.93

90

breast

0.66

100

3.64

100

ovary

0.54

100

1.15

27

pancreatic

0.53

100

1.06

0

blood

0.58

100

1.33

60

liver

0.56

100

1.32

52

  1. Performance metrics by the cancer type