Table 2 60 CpG sites analyzed by MS-MLPA
From: Intratumor heterogeneity index of breast carcinomas based on DNA methylation profiles
CpG sites respect to ATG | Gene Name (HGDB) | Chromosome Location | CpG sites respect to ATG | Gene Name (HGDB) | Chromosome Location |
|---|---|---|---|---|---|
72 bp to exon 2 | APC | 5q22 | 346 bp before | MGMT | 10q26.3 |
4658 bp before | ATM | 11q23 | 93 bp before | MGMT | 10q26.3 |
157 bp after | CACNA1A | 19p13.2 | 151 bp after | MGMT | 10q26.3 |
32 bp before | CACNA1G | 17q21.33 | 382 bp before | MGMT | 10q26.3 |
8560 bp before | CASP8 | 2q33.2 | 74 bp after ex 1 | MGMT | 10q26.3 |
1168 bp before | CCND2 | 12p13.3 | 464 bp after | MGMT | 10q26.3 |
1358 bp before | CCND2 | 12p13.3 | 661 bp before | PAX5 | 9p13 |
17 bp before | CD44 | 11p12 | 49 bp before | PAX6 | 11p13 |
411 bp before | CD44 | 11p12 | 43 bp before | PRDM2 | 1p36.21 |
42 bp before | CDH13 | 16q23.3 | 190 nt after | PYCARD | 16p11.2 |
20 bp before | CDH13 | 16q23.3 | 651 bp before | RARB | 3p24.2 |
31 bp after | CDKN2A | 9p21.3 | 824 bp before | RARB | 3p24.2 |
407 nt before | CHFR | 12q24 | 888 bp before | RARB | 3p24.2 |
400 nt before | CHFR | 12q24 | 141 bp before | RASSF1 | 3p21.3 |
714 bp before | DAPK1 | 9q22 | 79 bp before | RASSF1 | 3p21.3 |
366,437 bp after | DLC1 | 8p22 | 18 bp before | RUNX3 | 1p36.11 |
366,993 bp after | DLC1 | 8p22 | 232 bp before | SCGB3A1 | 5q35 |
163 bp after | ESR1 | 6q25.1 | 17 bp before | SCGB3A1 | 5q35 |
112 bp after | ESR1 | 6q25.1 | 42 bp before | SFRP4 | 7p14.1 |
658 bp before | GATA5 | 20q13.3 | 82 bp after | SRFP4 | 10q24.1 |
103 bp after | GSTP1 | 11q13 | 275 bp before | SFRP5 | 7p14.1 |
245 bp before | GSTP1 | 11q13 | 316 bp before | SFRP5 | 10q24.1 |
11 bp before ex 1 | HIC1 | 17p13 | 172 bp before | TIMP3 | 22q12.3 |
163 bp after | HTLF | 3q25.1 | 300 bp before | TIMP3 | 22q12.13 |
953 bp before | ID4 | 6p22.3 | 10,905 bp before | TP53 | 17p13.1 |
319 bp before | ID4 | 6p22.3 | 29,790 bp before | TP73 | 1p36.32 |
305 bp before | IGSF4 | 11q23 | 29,551 bp before | TP73 | 1p36.3 |
72 bp before | IGSF4 | 11q23 | 220 bp after | TWIST1 | 7p21.2 |
464 nt after | KCNQ1 | 11p15.5 | 80 nt before | VHL | 3P25 |
432 bp before | MGMT | 10q26.3 | 412 bp before | WT1 | 11p13 |