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Table 2 Proteins identified in shotgun proteomics

From: Novel biomarkers distinguishing pancreatic head Cancer from distal cholangiocarcinoma based on proteomic analysis

Accession Number Gene Protein name Spectral counting method G-test
Spectral count Rsc SpI G-score P-value
PHC DCC
Up-regulated in PHC
 Q9UJ72 ANXA10 Annexin A10 62 9 −2.49 0.70 39.2 <  0.01
 Q04695 KRT17 Cytokeratin-17 119 20 −2.37 0.62 68.8 <  0.01
 P21333 FLNA Filamin A 124 21 −2.36 0.66 71.4 <  0.01
 P06702 S100A9 S100 A9 39 6 −2.36 0.63 23.7 <  0.01
 Q9BVC6 TMEM109 Transmembrane protein 109 16 2 −2.27 0.66 10.8 <  0.01
Up-regulated in DCC       
 P05026 ATP1B1 Sodium/potassium-transporting ATPase subunit beta-1 0 15 3.84 −0.88 21.6 <  0.01
 P21397 MAOA Amino oxidase A 2 24 3.10 −0.70 23.7 <  0.01
 P20962 PTMS Parathymosin 0 7 2.86 −0.63 9.71 <  0.01
 P02671 FGA Fibrinogen alpha chain 2 17 2.63 −0.79 14.7 <  0.01
 P55011 SLC12A2 Solute carrier family 12 member 2 0 5 2.46 −0.63 6.75 <  0.01
 P04040 CAT Catalase 2 14 2.37 −0.76 11.0 <  0.01
 P11940 PABPC1 Polyadenylate-binding protein 1 1 9 2.33 −0.91 7.78 <  0.01
 P31327 CPS1 Carbamoyl-phosphate synthase 1 23 104 2.27 −0.61 64.0 <  0.01
 P40227 CCT6A T-complex protein 1 subunit zeta 3 15 2.07 −0.62 9.68 <  0.01
 P60842 EIF4A1 Eukaryotic initiation factor 4A-1 9 28 1.65 −0.73 12.0 <  0.01
  1. Rsc Protein ratio from spectral counting, SpI Spectral index, PHC Pancreatic head cancer, DCC Distal cholangiocarcinoma