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Table 7 Summary of results obtained at the gene level

From: Genome sequencing analysis of blood cells identifies germline haplotypes strongly associated with drug resistance in osteosarcoma patients

(a) List of 26 common genes from overlapping haplotypes associated with relapse (b) List of 10 dbSNP ids common to the two datasets amongst the overlapping haplotypes associated with relapse (c) Genes from targeted DMET analysis associated with both tumor necrosis and overall survival
7SK rs7071768 (MKI67) SLC22A8
AKR1D1 rs11016073 (MKI67) SLC22A1
CACNA2D4 rs61738284 (MKI67) UGT2B15
CDH13 rs11591817 (MKI67) CHST12
CDH9 rs10735005 (CACNA2D4)  
CDRT15 rs3217046 (SLC13A2)  
CSMD1 rs11568466 (SLC13A2)  
DGCR6* rs9890678 (SLC13A2)  
DQ576041 rs10573756 (PPP1R12C)  
DQ600701 (also known as PIR61811) * rs34521018 (PPP1R12C)  
DQ786190   
GABRG3   
HBE1   
LOC643401   
MALDR1 (also known as C10orf112) *   
MKI67   
OCA2   
OR51B5   
PCGF2   
PDZD4 *   
PIK3R1 *   
PKHD1   
PPP1R12C*   
SLC13A2*   
ZNF321P   
ZNF816   
  1. Genes marked with * indicate the most frequent haplotypes associated with relapse