Table 6 Results of survival analysis showing association of variations with overall survival
Name Of Variant | # of Samples without mutation | # of samples with mutation | # of events in samples without mutation | # of events in samples with mutation | P value from Log Rank (SC) Test | Adjusted p-value | Hazard Ratio* | Gene Name | ENCODE annotation | dbSNP id | Impact | Location |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr6_160551093_T_G | 44 | 15 | 8 | 7 | 0.007 | 0.59 | 3.723 | SLC22A1 | Heterochromatin; low signal | rs4646272 | Modifier | Intron variant |
chr11_62761161_C_T | 42 | 17 | 7 | 8 | 0.019 | 0.59 | 3.161 | SLC22A8 | Repressed | rs2187384 | Modifier | Intron variant, UTR3 |
chr4_69528597_A_G | 51 | 8 | 11 | 4 | 0.024 | 0.59 | 3.462 | UGT2B15 | . | rs34073924 | Modifier | Intron variant |
chr7_2472429_C_A | 53 | 6 | 11 | 4 | 0.040 | 0.59 | 3.124 | CHST12 | Transcription Elongation | rs3735099 | Moderate, modifier | Missense variant; upstream gene variant |
chr7_2472455_A_T | 53 | 6 | 11 | 4 | 0.040 | 0.59 | 3.124 | CHST12 | Transcription Elongation | rs3735100 | Moderate, modifier | Missense variant; upstream gene variant |