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Table 2 Feathers of the next-generation sequencing pipelines used for different sample types

From: Different next-generation sequencing pipelines based detection of tumor DNA in cerebrospinal fluid of lung adenocarcinoma cancer patients with leptomeningeal metastases

 

ddCAP

ddCAP on tissue

cHOPE

OncoAim

Number of Genes

10

10

59

59

Targets

all exons

all exons

hotspots

hotspots

Enrich method

targeted capture

targeted capture

multiple PCR

multiple PCR

DNA input

5~30 ng

50 ng

5~20 ng

10~20 ng

Instruments

NextSeq

NextSeq

NextSeq/miniSeq

NextSeq/miniSeq/MiSeq