Table 1 Thresholds for identification of specifically or shared upregulated DEGs
From: Gene expression profiles in genome instability-based classes of colorectal cancer
CRC groups | |||
|---|---|---|---|
| Â | specifically upregulated DEGs | ||
| Â | HB vs N | LB vs N | MSI vs N |
HB | FC > 2 and FDR < 0.05 | FC < 2 and FDR > 0.05 | FC < 2 and FDR > 0.05 |
LB | FC < 2 and FDR > 0.05 | FC > 2 and FDR < 0.05 | FC < 2 and FDR > 0.05 |
MSI | FC < 2 and FDR > 0.05 | FC < 2 and FDR > 0.05 | FC > 2 and FDR < 0.05 |
| Â | shared upregulated DEGs | ||
HB vs N | LB vs N | MSI vs N | |
HB and LB | FC > 2 and FDR < 0.05 | FC > 2 and FDR < 0.05 | FC < 2 and FDR > 0.05 |
LB and MSI | FC < 2 and FDR > 0.05 | FC > 2 and FDR < 0.05 | FC > 2 and FDR < 0.05 |
HB and MSI | FC > 2 and FDR < 0.05 | FC < 2 and FDR > 0.05 | FC > 2 and FDR < 0.05 |
HB, LB and MSI | FC > 2 and FDR < 0.05 | FC > 2 and FDR < 0.05 | FC > 2 and FDR < 0.05 |