Skip to main content

Table 3 rs12564469 and rs9434711 in replication and combined studies

From: A rare CHD5 haplotype and its interactions with environmental factors predicting hepatocellular carcinoma risk

  Allelesa Case, Control Ratio Countsb Case, Control Frequenciesc Chi square PARd P adjusted e P permutation f
Replication
 rs12564469 A > G 659:289, 570:298 0.695, 0.657 3.065 0.0800 0.1029 0.1062
 rs9434711 A > G 341:629, 309:579 0.352, 0.348 0.026 0.8718 0.8485 0.9601
Combined
 rs12564469 A > G 1003:431, 857:445 0.699, 0.658 5.328 0.0210 0.0290 0.0286
 rs9434711 A > G 511:953, 460:868 0.349, 0.346 0.022 0.8829 0.9137 0.9704
  1. aThe major allele is listed first, then the minor allele
  2. bNumber of alleles were compared in cases versus controls: allele(1):allele(2) cases, allele(1):allele(2) controls
  3. cFrequency of the association allele
  4. dPAR, population attributable risk
  5. eCalculated in logistical regression models with adjustment for age, gender, smoking and drinking status
  6. fP for 105 permutation test