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Table 1 Data from the seven patient cohorts

From: Cholesterol synthesis pathway genes in prostate cancer are transcriptionally downregulated when tissue confounding is minimized

Abbreviation Source Dataset reference Article reference Analysis Platform Samples PCa Normal Unique genes HP on all samples
Bertilsson Array Express E-MTAB-1041 [27] Microarray, A-MEXP-2087 - Illumina Human HT-12 WG-DASL 156 116 40 14,149 Yes
Chen GEO GSE8218 [21, 28] Microarray, Affymetrix Human Genome U133A Array 136 65 71 12,497 Yes
Taylor GEO GSE21034 [29] Microarray, Affymetrix Human Exon 1.0 ST Array 160 131 29 18,294 No
TCGA TCGA TCGA [30] RNA-Seq, Illumina HiSeq 2000/ Genome Analyzer IIX 549 497 52 20,504 No
Prensner dbGaP phs000443. v1.p1 [31] RNA-Seq, Illumina Genome Analyzer 116 78 38 23,712 No
Sboner GEO GSE16560 [35] Microarray, Human 6 k Transcriptionally Informative Gene Panel for DASL. 281 281 0 6102 No
Erho GEO GSE46691 [36] Exon array, Affymetrix Human Exon 1.0 ST Array [probe set (exon) version] 545 545 0 17,163 No
  1. Footnote: HP histopathology, GEO gene expression omnibus, TCGA the cancer genome atlas, dbGap the database of genotypes and phenotypes, PCa prostate cancer