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Table 4 Selected chimeras (10 out of 87 total) identified in three LC samples subjected to transcriptomic analysis

From: Identification of novel enriched recurrent chimeric COL7A1-UCN2 in human laryngeal cancer samples using deep sequencing

Category

Up-stream Gene

Up-genome position

Down-stream Gene

Down-genome position

Frameshift

Interchromosomal

ALAD

chr9: 116149551

LAMTOR4

chr7: 99751605

NA

Interchromosomal

ARHGAP8

chr22: 45221411

NUP214

chr9: 134103680

frame-shift

Interchromosomal

ASXL1

chr20: 31024580

RPS6

chr9: 19378798

frame-shift

Interchromosomal

BAIAP2L1

chr7: 97984354

MARCKS

chr6: 114180859

frame-shift

Interchromosomal

C2CD3

chr11: 73840431

SMOX

chr20: 4101628

NA

Interchromosomal

CDC14B

chr9: 99284788

PTHLH

chr12: 28116703

frame-shift

Interchromosomal

PPP2R1A

chr19: 52714563

IPO9

chr1: 201827608

frame-shift

Interchromosomal

CST3

chr20: 23618257

UBE3C

chr7: 157060279

frame-shift

Interchromosomal

HSD17B4

chr5: 118809616

OAS3

chr12: 113410220

NA

Interchromosomal

KMT2E

chr7: 104654982

LGALSL

chr2: 64685419

frame-shift

Intrachromosomal

COL7A1

chr3: 48602216

UCN2

chr3: 48600569

frame-shift

Intrachromosomal

COQ9

chr16: 57494016

POLR2C

chr16: 57496472

frame-shift

Intrachromosomal

DENND2C

chr1: 115128157

BCAS2

chr1: 115124012

NA

intrachromosomal

EEF1D

chr8: 144661949

NAPRT1

chr8: 144660113

NA

Intrachromosomal

GBP3

chr1:89474630

CCBL2

chr1: 89435150

frame-shift

Intrachromosomal

HDGF

chr1: 156713444

MRPL24

chr1: 156711380

frame-shift

Intrachromosomal

KRT16P4

chr17: 18354079

LGALS9C

chr17:18387189

NA

Intrachromosomal

MAP2K5

chr15: 68065090

SKOR1

chr15: 68118274

frame-shift

Intrachromosomal

MGRN1

chr16: 4733933

NUDT16L1

chr16: 4744959

frame-shift

Intrachromosomal

NSUN4

chr1: 46826500

FAAH

chr1: 46867763

frame-shift

Intrachromosomal

NUDT14

chr14: 105642871

JAG2

chr14: 105624100

frame-shift

Intrachromosomal

ODF3B

chr22: 50968332

SCO2

chr22: 50962852

NA