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Table 2 Single Marker Association in NMSC patients (n = 209) compared to different reference groups

From: Coordinated expression and genetic polymorphisms in Grainyhead-like genes in human non-melanoma skin cancers

GRHL3

Observed frequency (genotypes)a

Expected frequency (genotypes)a

Allelic OR (95%CI)

p-value

Genotypic OR (C/G vs C/C) (95%CI) p-value

SNP ID

rs141193530

0.01667

(0/7/202)

ExAC database (Non-Finnish European)

OR = 2.12 (1.0006 to 4.5021)

P = 0.0498

OR = 2.19 (1.0266 to 4.6798)

P = 0.0426

chromosomal localizationb

chr1:24,669,459 exon 11

0.00796

(6/519/32827)

ref/alt

C/G

1kGP database (European)

OR = 3.41 (1.0760 to 10.8051)

P = 0.0371

OR = 3.45 (1.0828 to 11.0017)

P = 0.0362

consequence

p.Pro455Ala

0.00497

(0/5/1001)

  1. agenotypes GG/CG/CC
  2. bposition according to GRCh37/hg19 genome build
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BMC Cancer

ISSN: 1471-2407

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