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Table 2 Deregulated genes in CD133lo CSCs when compared to CD133hi non-CSCs. List of top 30 genes up-regulated in CD133lo cells

From: In vitro characterization of CD133lo cancer stem cells in Retinoblastoma Y79 cell line

Gene ID Gene Name PValueLogRatio MEAN_LOG2_R\G_RATIO
AF334588 Homo sapiens P25 mRNA 1.25E-16 4.041897
KLF17 Homo sapiens Kruppel like factor 17 3.17E-17 4.037766
A_24_P649507 hypothetical protein MGC5566 1.12E-18 3.992264
AK125176 cDNA FLJ43186 fis, clone FCBBF3022767. 5.17E-16 3.863978
PDE4DIP phosphodiesterase 4D interacting protein [Homo sapiens (human)] 1.05E-10 3.443785
U22172 Human DNA damage repair and recombination protein RAD52 pseudogene mRNA, partial cds 5.80E-16 3.371156
VNN3 vanin 3 [Homo sapiens (human)] 4.99E-08 3.134369
ZDHHC15 zinc finger DHHC-type containing 15 [Homo sapiens (human)] 4.15E-15 3.10141
A_24_P817490 RST23879 Athersys RAGE Library Homo sapiens cDNA 8.75E-17 3.094543
A_23_P63447 unknown 8.78E-06 3.034319
C1orf131 chromosome 1 open reading frame 131 [Homo sapiens (human)] 3.60E-16 3.004795
PTGS2 prostaglandin-endoperoxide synthase 2 [Homo sapiens (human)] 2.08E-09 2.986919
LOC154761 family with sequence similarity 115, member C pseudogene [Homo sapiens (human)] 6.41E-10 2.874717
NP083564 uncharacterized protein LOC100041774 2.20E-08 2.833521
GIMAP1 GTPase IMAP family member 1 [Homo sapiens] 2.47E-06 2.786683
PPP1R14C alternative protein PPP1R14C [Homo sapiens] 2.21E-08 2.736343
MECOM MDS1 and EVI1 complex locus [Homo sapiens (human)] 3.30E-07 2.656235
CD69 CD69 molecule [Homo sapiens (human)] 1.23E-05 2.593014
A_24_P925901 Homo sapiens mRNA for hSSH-2, complete cds. [AB072358] 4.37E-07 2.589578
MORN5 MORN repeat containing 5 [Homo sapiens (human)] 1.41E-05 2.525711
ENST00000442408 ens|cDNA FLJ37906 fis, clone COLON2004318 [Source:UniProtKB/TrEMBL;Acc:Q8N9A9] [ENST00000442408] 9.55E-07 2.521708
RNF175 ring finger protein 175 [Homo sapiens (human)] 2.12E-12 2.477196
AF090887 FLI_CDNA 6.31E-08 2.473979
SYT4 synaptotagmin 4 [Homo sapiens (human)] 3.03E-07 2.436962
STK32B serine/threonine kinase 32B [Homo sapiens (human)] 1.69E-05 2.389932
KIAA1377 centrosomal protein 126 3.73E-03 2.384472
ENST00000390632 immunoglobulin heavy variable 3–66 1.32E-04 2.355071
HOXA11 homeobox A11 [Homo sapiens (human)] 4.57E-07 2.319228
ATF7IP2 activating transcription factor 7 interacting protein 2 [Homo sapiens (human)] 2.59E-05 2.313631
MACC1 MACC1, MET transcriptional regulator [Homo sapiens (human)] 2.21E-02 1.516496