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Table 1 Summary of subject-level factors considered for association with direction of tumor-normal microRNA differential expression

From: Identifying factors associated with the direction and significance of microRNA tumor-normal expression differences in colorectal cancer

 

Proximal (N = 567)

Distal (N = 550)

Rectal (N = 719)

Factor: Interpretation

N0

N1

Nmiss

N0

N1

Nmiss

N0

N1

Nmiss

MSI: MSI (0 = stable / MSS, 1 = unstable / MSI)

428

128

11

508

23

19

699

16

4

CIMP: CIMP status (0 = low, 1 = high)

280

204

83

403

63

84

599

76

44

BRAF: BRAF mutation status (0 = none, 1 = mutation)

391

73

103

433

15

102

685

19

15

TP53: TP53 mutation status (0 = none, 1 = mutation)

325

222

20

255

265

30

344

353

22

KRAS: KRAS mutation status (0 = none, 1 = mutation)

341

198

28

364

141

45

502

212

5

STAGE_D: SEER summary stage distant (0 = no, 1 = yes)

475

92

0

459

91

0

632

87

0

STAGE_L: SEER summary stage local (0 = no, 1 = yes)

417

150

0

365

185

0

393

326

0

STAGE_R: SEER summary stage regional (0 = no, 1 = yes)

252

315

0

293

257

0

431

288

0

AJCC_1: AJCC stage 1 (0 = no, 1 = yes)

479

88

0

404

146

0

450

269

0

AJCC_2: AJCC stage 1 or 2 (0 = no, 1 = yes)

285

282

0

254

296

0

313

406

0

AJCC_3: AJCC stage 1, 2, or 3 (0 = no [stage 4], 1 = yes)

102

465

0

106

444

0

111

608

0

SEX: 1 = male, 0 = female

286

281

0

300

250

0

409

310

0

DIFF_NA: Tumor differentiation n/a (0 = no, 1 = yes)

242

24

301

508

40

2

0

719

0

DIFF_WELL: Tumor differentiation well (0 = no, 1 = yes)

516

50

1

491

57

2

719

0

0

DIFF_MOD: Tumor differentiation moderate (0 = no, 1 = yes)

199

367

1

161

387

2

719

0

0

DIFF_POOR: Tumor differentiation poor (0 = no, 1 = yes)

441

125

1

484

64

2

719

0

0

VITAL_ALIVE: Vital status at last follow-up (0 = dead, 1 = alive)

281

285

1

261

288

1

341

378

0

SURV5YRS: Survival at least 60 months after sample taken (0 = no, 1 = yes)

257

309

1

233

316

1

297

422

0

COD_CRC: Cause of death CRC (0 = no, 1 = yes)

81

179

307

70

160

320

112

229

378

ALCOHOL_reg: Referent year alcohol consumption at least 1.0 g/day (0 = no, 1 = yes)

247

198

122

243

175

132

292

246

181

WINE_any: More than 0 4 oz. glasses wine per day (0 = no, 1 = yes) during referent year

303

142

122

284

134

132

385

153

181

LIQUOR_any: More than 0 servings liquor per day (0 = no, 1 = yes) during referent year

326

119

122

301

117

132

421

117

181

BEER_any: More than 0 servings beer per day (0 = no, 1 = yes) during referent year

327

118

122

317

101

132

374

164

181

CIG_ever: Ever smoked cigarettes (0 = no, 1 = yes)

180

264

123

183

234

133

239

299

181

CIG_current: Current smoker (0 = no, 1 = yes)

377

67

123

360

57

133

448

90

181

CIG_former: Former smoker (0 = no, 1 = yes)

247

197

123

240

177

133

341

197

181

ESTROGEN: Estrogen exposure within past 2 years (0 = no, 1 = yes; missing for all males)

133

69

365

112

72

366

119

108

492

BMI_normal: BMI [“for analysis 2 years ago”] less than 25 (0 = no, 1 = yes)

299

144

124

270

143

137

355

179

185

BMI_overweight: BMI at least 25 and less than 30 (0 = no, 1 = yes)

249

194

124

258

155

137

344

190

185

BMI_obese: BMI at least 30 and less than 40 (0 = no, 1 = yes)

355

88

124

310

103

137

390

144

185

BMI_extreme: BMI at least 40 (0 = no, 1 = yes)

426

17

124

401

12

137

513

21

185

  1. All factors were coded 0/1, and corresponding sample sizes in proximal, distal, and rectal sites are indicated by N0 and N1. Missing values in some factors result in differences (Nmiss) between overall subject totals (N) and the sum of N0 + N1