Skip to main content

Table 3 Differential Pathway Enrichment in FFPE samples

From: Comparison of triple-negative breast cancer molecular subtyping using RNA from matched fresh-frozen versus formalin-fixed paraffin-embedded tissue

Gene Set Name

# Genes Overlap

p-value

FDR q-value

Cellular Compartment C5

Plasma membrane

197

6.62E-61

1.03E-57

Membrane

234

3.30E-59

2.58E-56

Plasma membrane part

173

2.36E-58

1.23E-55

Membrane part

202

5.71E-53

2.23E-50

Intrinsic to membrane

177

2.20E-51

6.87E-49

Intrinsic to plasma membrane

150

2.82E-51

7.35E-49

Integral to membrane

173

1.24E-49

2.78E-47

Integral to plasma membrane

146

3.29E-49

6.43E-47

Neuroactive ligand receptor

55

1.12E-25

1.95E-23

Canonical Pathways C2

Naba matrisome

97

6.19E-18

9.67E-16

Neuroactive ligand receptor

55

1.12E-25

1.49E-22

Matrisome

97

6.19E-18

4.11E-15

Signaling by GPCR

85

2.44E-15

9.19E-13

GPCR downstream signaling

78

2.76E-15

9.19E-13

Neuronal system

42

4.12E-15

1.10E-12

Transmembrane transport

51

1.89E-14

4.20E-12

Matrisome associated

71

1.87E-13

3.55E-11

Calcium signaling pathway

31

3.00E-13

4.98E-11

Transmission chemical synapses

28

1.48E-10

2.18E-08

GPCR ligand binding

43

3.61E-10

4.80E-08