Table 2 SNPs and mutations detected in the analyzed breast cancer patient cohort of 55 patients
From: In silico SNP analysis of the breast cancer antigen NY-BR-1
SNP ID | Prediction | Frequency in Patient Cohort | Minor Allele Frequency in dbSNP | p-value (Fisher’s exact test) |
|---|---|---|---|---|
rs116939015 | 1,82 | 0,59 | 0,4921 | |
rs1200875 | damaging | 45,45 | 12,89 | 0,0018 |
rs1200876 | 45,45 | 12,77 | 0,0016 | |
rs1209750 | 89,09 | 48,22 | 0,0149 | |
rs12766884 | 1,82 | 4,432 | 0,0853 | |
rs16937417 | 1,82 | 2,61 | 0,3646 | |
rs34042320 | 18,18 | 3,27 | 0,0033 | |
rs34552277 | 38,18 | 22,76 | 0,3381 | |
rs41276130 | damaging | 21,82 | 4,17 | 0,0020 |
rs41304589 | 9,09 | 2,55 | 0,2059 | |
rs61737412 | damaging | 27,27 | 4,13 | 3,80E-05 |
somatic (chr10:37430943:C/T) | 1,82 | NA | ||
somatic (chr10:37447328:A/G) | 1,82 | NA |