Table 2 Fusion genes (50) detected in the MNTI by FusionCatcher analysis of RNA-Seq data

RPLP1-C19MC

15:69745292:+

19:54278860:+

Balanced chromosomal translocation

C19MC-RPLP1

19:54278886:+

15:69745266:+

Balanced chromosomal translocation (reciprocal fusion)

RP11-386 M24.4-H2AFV

15:93276847:-

7:44873962:-

Balanced chromosomal translocation

H2AFV-RP11-386 M24.4

7:44875191:-

15:93277223:-

Balanced chromosomal translocation (reciprocal fusion)

TRA@-RBBP4

14:22032433:+

1:33133924:+

Balanced chromosomal translocation

RBBP4-TRA@

1:33146113:+

14:22034317:+

Balanced chromosomal translocation (reciprocal fusion)

COL1A1-DES

17:48261671:-

2:220290692:+

Chromosomal translocation

COL1A1-SCARB2

17:48262192:-

4:77109675:-

Chromosomal translocation

COL1A1-PLTP

17:48264070:-

20:44537829:-

Chromosomal translocation

COL1A1-TRIOBP

17:48264212:-

22:38126504:+

Chromosomal translocation

COL3A1-COL18A1

2:189851865:+

21:46925141:+

Chromosomal translocation

COL3A1-FAT1

2:189871155:+

4:187561585:-

Chromosomal translocation

COL3A1-CD81

2:189871176:+

11:2411930:+

Chromosomal translocation

COL3A1-ATP5B

2:189873714:+

12:57037364:-

Chromosomal translocation

COL3A1-LRP1

2:189876968:+

12:57597641:+

Chromosomal translocation

CTSB-COL3A1

8:11703238:-

2:189873743:+

Chromosomal translocation

DDOST-ELMOD1

1:20978357:-

11:107525369:+

Chromosomal translocation

EEF2-TAGLN2

19:3982389:-

1:159888278:-

Chromosomal translocation

IGK@-LL22NC03-2H8.5

2:90296180:+

22:22640524:-

Chromosomal translocation

PINK1-AS-ELMOD1

1:20978357:-

11:107525369:+

Chromosomal translocation

PPP2R5C-RP11-168 J18.6

14:102375968:+

3:52408668:+

Chromosomal translocation

SERPINF1-SPARC

17:1680627:+

5:151044730:-

Chromosomal translocation

TAF1C-COL1A1

16:84218540:-

17:48268811:-

Chromosomal translocation

TSIX-COL1A2

X:73020413:+

7:94060360:+

Chromosomal translocation

COL3A1-CHPF

2:189860508:+

2:220404337:-

Intra-chromosomal deletion

FBXL18-TNRC18

7:5530862:-

7:5434226:-

Intra-chromosomal deletion

LSP1-TNNT3

11:1908806:+

11:1944087:+

Intra-chromosomal deletion

SMC5-AS1-MAMDC2-AS1

9:72831202:-

9:72703410:-

Intra-chromosomal deletion

TFDP2-XRN1

3:141820577:-

3:142084208:-

Intra-chromosomal deletion

TPST1-GS1-124 K5.4

7:65751696:+

7:65960242:+

Intra-chromosomal deletion

ARMC9-AC017104.6

2:232234836:+

2:232258192:+

Read-through transcript

BCKDK-KAT8

16:31123348:+

16:31128784:+

Read-through transcript

C17ORF107-GP1BA

17:4902763:+

17:4934342:+

Read-through transcript

C1GALT1-AC005532.5

7:7283381:+

7:7317216:+

Read-through transcript

CD4-P3H3

12:6925379:+

12:6938651:+

Read-through transcript

CHD4-NOP2

12:6680035:-

12:6677088:-

Read-through transcript

EIF3K-ACTN4

19:39116742:+

19:39191240:+

Read-through transcript

FAM89B-EHBP1L1

11:65341233:+

11:65346549:+

Read-through transcript

GPR141-NME8

7:37725186:+

7:37896876:+

Read-through transcript

GPX7-FAM159A

1:53072617:+

1:53108535:+

Read-through transcript

HEPHL1-PANX1

11:93800909:+

11:93862494:+

Read-through transcript

LMO1-RIC3

11:8248522:-

11:8174970:-

Read-through transcript

LMO7-AS1-COMMD6

13:76209965:-

13:76123565:-

Read-through transcript

NPTXR-DNAL4

22:39219088:-

22:39177014:-

Read-through transcript

RFPL1-NEFH

22:29838118:+

22:29876241:+

Read-through transcript

SIX3-AC012354.6

2:45171866:+

2:45193557:+

Read-through transcript

SLC25A43-SLC25A5

X:118544325:+

X:118602415:+

Read-through transcript

SSSCA1-EHBP1L1

11:65341233:+

11:65346549:+

Read-through transcript

TBC1D23-NIT2

3:100039815:+

3:100057931:+

Read-through transcript

TMEM101-PYY

17:42100940:-

17:42043900:-

Read-through transcript

VPS45-PLEKHO1

1:150082742:+

1:150123102:+

Read-through transcript

ZCWPW2-LINC00693

3:28562607:+

3:28616561:+

Read-through transcript

ZNF836-ZNF616

19:52663718:-

19:52633841:-

Read-through transcript