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Table 1 Protein targets

From: Dynamic modulation of phosphoprotein expression in ovarian cancer xenograft models

Entrez Gene ID

Gene symbol

Protein (phospho-protein)

Gene name

Function

1017

CDK2

CDK2, pCDK2

cyclin-dependent kinase 2

CELL CYCLE

891

CCNB1

CyclinB1

cyclin B1

CELL CYCLE

595

CCND1

CyclinD1

cyclin D1

CELL CYCLE

4609

MYC

Myc

v-myc myelocytomatosis viral oncogene homolog (avian)

CELL CYCLE

1026

CDKN1A

P21

cyclin-dependent kinase inhibitor 1A (p21, Cip1)

CELL CYCLE

1027

CDKN1B

P27

cyclin-dependent kinase inhibitor 1B (p27, Kip1)

CELL CYCLE

5925

RB1

pRb

retinoblastoma 1

CELL CYCLE

672

BRCA1

BRCA1, pBRCA1

breast cancer 1, early onset

DNA DAMAGE REPAIR

2067

ERCC1

ERCC1

excision repair cross-complementing rodent repair deficiency, complementation group 1

DNA DAMAGE REPAIR

4292

MLH1

MLH1

mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)

DNA DAMAGE REPAIR

4436

MSH2

MSH2

mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)

DNA DAMAGE REPAIR

2956

MSH6

MSH6

mutS homolog 6 (E. coli)

DNA DAMAGE REPAIR

1111

CHEK1

pChk1

CHK1 checkpoint homolog (S. pombe)

DNA DAMAGE REPAIR

3014

H2AFX

pH2AX

H2A histone family, member X

DNA DAMAGE REPAIR

3021

H3F3B

pHH3

H3 histone, family 3B (H3.3B)

DNA DAMAGE REPAIR

5395

PMS2

PMS2

PMS2 postmeiotic segregation increased 2 (S. cerevisiae)

DNA DAMAGE REPAIR

7157

TP53

pP53

tumor protein p53

DNA DAMAGE REPAIR

8202

NCOA3

AIB1

nuclear receptor coactivator 3

GROWTH SIGNALING:MAPK signaling

207

AKT1

AKT, pAKT

v-akt murine thymoma viral oncogene homolog 1

GROWTH SIGNALING:PI3K/AKT signaling

1499

CTNNB1

BCatenin, pBCatenin

catenin (cadherin-associated protein), beta 1, 88 kDa

GROWTH SIGNALING:Wnt signaling

1956

EGFR

EGFR

epidermal growth factor receptor (erythroblastic leukemia viral (v-erb-b) oncogene homolog, avian)

GROWTH SIGNALING:ERBB signaling

2099

ESR1

ER,pER

estrogen receptor 1

GROWTH SIGNALING:ESR signaling

5594

MAPK1

ERK, pERK

mitogen-activated protein kinase 1

GROWTH SIGNALING:MAPK signaling

2064

ERBB2

HER2

v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)

GROWTH SIGNALING:ERBB signaling

2065

ERBB3

HER3

v-erb-b2 erythroblastic leukemia viral oncogene homolog 3 (avian)

GROWTH SIGNALING:ERBB signaling

2066

ERBB4

HER4

v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)

GROWTH SIGNALING:ERBB signaling

3486

IGFBP3

IGFBP3

insulin-like growth factor binding protein 3

GROWTH SIGNALING: IGF signaling

3488

IGFBP5

IGFBP5

insulin-like growth factor binding protein 5

GROWTH SIGNALING: IGF signaling

6194

RPS6

S6, pS6

ribosomal protein S6

GROWTH SIGNALING:mTOR signaling, hypoxia

5241

PGR

PgR

progesterone receptor

GROWTH SIGNALING:PI3K/AKT signaling

5604

MAP2K1

pMEK

mitogen-activated protein kinase kinase 1

GROWTH SIGNALING:MAPK signaling

4790

NFKB1

pNFkB

nuclear factor of kappa light polypeptide gene enhancer in B-cells 1

GROWTH SIGNALING:NFkB signaling

6774

STAT3

pSTAT3

signal transducer and activator of transcription 3

GROWTH SIGNALING:Jak/STAT signaling

5728

PTEN

PTEN

phosphatase and tensin homolog

GROWTH SIGNALING:PI3K/AKT signaling

1366

CLDN7

Claudin7

claudin 7

ETM/INVASION

999

CDH1

Ecadherin

cadherin 1, type 1, E-cadherin (epithelial)

ETM/INVASION

3091

HIF1A

HIF1alpha

hypoxia inducible factor 1, alpha subunit

ETM/INVASION

4233

MET

MET, pMET

met proto-oncogene

ETM/INVASION

5054

SERPINE1

PAI

serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1

ETM/INVASION

6615

SNAI1

Snail

snail homolog 1 (Drosophila)

ETM/INVASION

7431

VIM

Vimentin

vimentin

ETM/INVASION

  1. Details and function of 49 protein form targets (41 proteins) and their pathways tested in the xenograft protein expression experiment. There were 16 phosphorylated proteins, 8 of which were tested for both phosphorylated and unphosphorylated forms