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Table 4 List of genes differentiated between pilocytic astrocytomas of three different locations

From: Transcriptional profiles of pilocytic astrocytoma are related to their three different locations, but not to radiological tumor features

Probe set Gene symbol Description Parametric p-value FDR Geom mean of intensities in class M1 Geom mean of intensities in class M2 Geom mean of intensities in class M3 Pairwise significant
228462_at IRX2 Iroquois homeobox 2 <1e-07 <1e-07 7.81 36.27 470.74 (1, 2), (1, 3), (2, 3)
231666_at PAX3 Paired box 3 <1e-07 <1e-07 4.97 7.59 279.28 (1, 3), (2, 3)
207250_at SIX6 SIX homeobox 6 <1e-07 <1e-07 7.32 246.4 4.75 (1, 2), (3, 2)
206140_at LHX2 LIM homeobox 2 <1e-07 <1e-07 1680.77 2642.73 11.02 (3, 1), (3, 2)
223582_at GPR98 G protein-coupled receptor 98 <1e-07 <1e-07 50.94 146.32 15.08 (1, 2), (3, 1), (3, 2)
230720_at RNF182 Ring finger protein 182 <1e-07 <1e-07 171.48 1797.68 2061.29 (1, 2), (1, 3)
210239_at IRX5 Iroquois homeobox 5 <1e-07 <1e-07 7.84 25.89 100.36 (1, 2), (1, 3), (2, 3)
213285_at TMEM30B Transmembrane protein 30B <1e-07 <1e-07 7.23 26.44 5.08 (1, 2), (3, 2)
230472_at IRX1 Iroquois homeobox 1 <1e-07 <1e-07 10.8 66.79 205.19 (1, 2), (1, 3), (2, 3)
227202_at CNTN1 Contactin 1 <1e-07 <1e-07 262.72 51.46 1717.72 (2, 1), (1, 3), (2, 3)
214954_at SUSD5 Sushi domain containing 5 <1e-07 <1e-07 125.14 1108.04 1603.52 (1, 2), (1, 3)
206018_at FOXG1 Forkhead box G1 <1e-07 <1e-07 1197.42 11.25 4.93 (2, 1), (3, 1)
208221_s_at SLIT1 Slit homolog 1 (Drosophila) <1e-07 <1e-07 8.42 17.8 6 (1, 2), (3, 2)
238021_s_at CRNDE Colorectal neoplasia differentially expressed (non-protein coding) <1e-07 <1e-07 51.09 382.35 1216.52 (1, 2), (1, 3), (2, 3)
226448_at FAM89A Family with sequence similarity 89, member A <1e-07 <1e-07 104 625.78 808.9 (1, 2), (1, 3)
229831_at CNTN3 Contactin 3 (plasmacytoma associated) <1e-07 <1e-07 21.57 9.97 176.8 (1, 3), (2, 3)
228347_at SIX1 SIX homeobox 1 <1e-07 <1e-07 13.8 421.71 9.17 (1, 2), (3, 2)
206634_at SIX3 SIX homeobox 3 <1e-07 <1e-07 4.86 49.47 4.75 (1, 2), (3, 2)
238022_at CRNDE Colorectal neoplasia differentially expressed (non-protein coding) <1e-07 <1e-07 14 51.83 134.25 (1, 2), (1, 3), (2, 3)
238878_at ARX Aristaless related homeobox <1e-07 <1e-07 102.99 6.88 4.85 (2, 1), (3, 1)
227614_at HKDC1 Hexokinase domain containing 1 <1e-07 <1e-07 30.54 9.56 8.08 (2, 1), (3, 1)
205858_at NGFR Nerve growth factor receptor (TNFR superfamily, member 16) <1e-07 <1e-07 135.44 53.07 14.67 (3, 1), (3, 2)
  1. M1-cerebral hemispheric tumor; M2-optic tract and hypothalamic tumor; M3-cerebellar tumor