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Table 4 List of genes differentiated between pilocytic astrocytomas of three different locations

From: Transcriptional profiles of pilocytic astrocytoma are related to their three different locations, but not to radiological tumor features

Probe set

Gene symbol

Description

Parametric p-value

FDR

Geom mean of intensities in class M1

Geom mean of intensities in class M2

Geom mean of intensities in class M3

Pairwise significant

228462_at

IRX2

Iroquois homeobox 2

<1e-07

<1e-07

7.81

36.27

470.74

(1, 2), (1, 3), (2, 3)

231666_at

PAX3

Paired box 3

<1e-07

<1e-07

4.97

7.59

279.28

(1, 3), (2, 3)

207250_at

SIX6

SIX homeobox 6

<1e-07

<1e-07

7.32

246.4

4.75

(1, 2), (3, 2)

206140_at

LHX2

LIM homeobox 2

<1e-07

<1e-07

1680.77

2642.73

11.02

(3, 1), (3, 2)

223582_at

GPR98

G protein-coupled receptor 98

<1e-07

<1e-07

50.94

146.32

15.08

(1, 2), (3, 1), (3, 2)

230720_at

RNF182

Ring finger protein 182

<1e-07

<1e-07

171.48

1797.68

2061.29

(1, 2), (1, 3)

210239_at

IRX5

Iroquois homeobox 5

<1e-07

<1e-07

7.84

25.89

100.36

(1, 2), (1, 3), (2, 3)

213285_at

TMEM30B

Transmembrane protein 30B

<1e-07

<1e-07

7.23

26.44

5.08

(1, 2), (3, 2)

230472_at

IRX1

Iroquois homeobox 1

<1e-07

<1e-07

10.8

66.79

205.19

(1, 2), (1, 3), (2, 3)

227202_at

CNTN1

Contactin 1

<1e-07

<1e-07

262.72

51.46

1717.72

(2, 1), (1, 3), (2, 3)

214954_at

SUSD5

Sushi domain containing 5

<1e-07

<1e-07

125.14

1108.04

1603.52

(1, 2), (1, 3)

206018_at

FOXG1

Forkhead box G1

<1e-07

<1e-07

1197.42

11.25

4.93

(2, 1), (3, 1)

208221_s_at

SLIT1

Slit homolog 1 (Drosophila)

<1e-07

<1e-07

8.42

17.8

6

(1, 2), (3, 2)

238021_s_at

CRNDE

Colorectal neoplasia differentially expressed (non-protein coding)

<1e-07

<1e-07

51.09

382.35

1216.52

(1, 2), (1, 3), (2, 3)

226448_at

FAM89A

Family with sequence similarity 89, member A

<1e-07

<1e-07

104

625.78

808.9

(1, 2), (1, 3)

229831_at

CNTN3

Contactin 3 (plasmacytoma associated)

<1e-07

<1e-07

21.57

9.97

176.8

(1, 3), (2, 3)

228347_at

SIX1

SIX homeobox 1

<1e-07

<1e-07

13.8

421.71

9.17

(1, 2), (3, 2)

206634_at

SIX3

SIX homeobox 3

<1e-07

<1e-07

4.86

49.47

4.75

(1, 2), (3, 2)

238022_at

CRNDE

Colorectal neoplasia differentially expressed (non-protein coding)

<1e-07

<1e-07

14

51.83

134.25

(1, 2), (1, 3), (2, 3)

238878_at

ARX

Aristaless related homeobox

<1e-07

<1e-07

102.99

6.88

4.85

(2, 1), (3, 1)

227614_at

HKDC1

Hexokinase domain containing 1

<1e-07

<1e-07

30.54

9.56

8.08

(2, 1), (3, 1)

205858_at

NGFR

Nerve growth factor receptor (TNFR superfamily, member 16)

<1e-07

<1e-07

135.44

53.07

14.67

(3, 1), (3, 2)

  1. M1-cerebral hemispheric tumor; M2-optic tract and hypothalamic tumor; M3-cerebellar tumor
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BMC Cancer

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