Promoter region
| | | | | |
BRCA1
|
Exon 1 (extended promoter)
|
chr17: 41277463-41277365
|
+37 to +135
|
No
|
11
|
Yes
|
CD44
|
Promoter
|
chr11: 35160374-35160443
|
-43 to +26
|
Yes
|
8
|
No
|
ESR1
|
Exon 2 (extended promoter)
|
chr6: 152129110 - 152129167
|
+656 to +713
|
Yes
|
5
|
Unclear
|
GSTM2
|
Promoter
|
chr1: 110210582-110210641
|
-62 to -3
|
Yes
|
8
|
No
|
GSTP1
|
Exon 1 (extended promoter)
|
chr11: 67351205-67351215
|
+139 to +149
|
Yes
|
4
|
Yes
|
MAGEA1f
|
Promoter
|
chrX: 152486180-152486129
|
-13 to -64
|
No
|
6
|
No
|
MSI1
|
Promoter
|
chr12: 120807571-120807474
|
-588 to -491
|
No
|
5
| |
NFE2L3
|
Exon 1 (Extended promoter)
|
chr7: 26192663-26192744
|
+816 to +897
|
Yes
|
14
|
No
|
RASSF1A
|
Exon 1 (extended promoter)
|
chr3: 50378293-50378233
|
+74 to +134
|
Yes
|
9
|
Yes
|
RUNX3
|
Exon 1 (extended promoter)
|
chr1: 25256198-25256306
|
+464 to +572
|
Yes
|
28
|
Yes
|
SIX3
|
Exon 1 (extended promoter)
|
chr2: 45169609-45169529
|
+492 to +572
|
Yes
|
12
|
Unclear
|
TFF1
|
Promoter
|
chr21: 43786664-43786628
|
-20 to +16
|
No
|
5
|
Unclear
|
Upstream of promoter
| | | | | |
EN1
|
Upstream of promoter
|
chr2: 119611385-119611338
|
-5579 to -5626
|
Yes
|
6
|
No
|
PAX3g
|
Far upstream
|
chr2: 223170608-223170643
|
-6928 to -6893
|
Yes
|
5
|
No
|
PITX2f,h
|
Far upstream or intron I
|
chr4: 111562566-111562677
|
-18312 to -18413/+602 to +713
|
No
|
10
|
No
|
SGK1h
|
Far upstream/ alt. exon 1
|
chr6: 134638893-134638831
|
-14823 to -14761/+303 to +365
|
Yes
|
6
|
Unclear
|
Introns
| | | | | | |
APC
|
Intron 1 or promoter
|
chr5: 112073426-112073445
|
+30224 to +30243/-130 to -111
|
No
|
4
|
Yes
|
EGFR
|
intron 1
|
chr7: 55088080-55088104
|
+1355 to +1379
|
Yes
|
4
|
No
|
LHX2
|
Intron 3
|
chr9: 126777854-126777983
|
+3966 to +4095
|
Yes
|
11
|
No
|
RFX1f
|
Intron 7
|
chr19: 14089984-14089969
|
+27150 to +27165
|
No
|
4
|
No
|
SOX9
|
Intron 2
|
chr17: 70119151-70119195
|
+1990 to +2034
|
Yes
|
4
|
No
|
DNA Repeats
| | | | | | |
LINE-1
|
N.A.
|
DNA Repeat
|
N.A.
| |
4
|
N.A.
|
Sat2
|
N.A.
|
DNA Repeat
|
N.A.
| |
2
|
N.A.
|