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Table 3 Association results for the 10 candidate SNPs

From: Genome-wide association study of susceptibility loci for breast cancer in Sardinian population

A       
SNP corr FREQ1 cases FREQ1_CT N p-value n.a. p-value*
rs857989 0.811 0.131 0.106 2866 3.99E-03 4.02E-03
rs11178748 0.824 0.083 0.079 2848 0.289 0.560
rs1903974 0.940 0.043 0.070 2837 5.94E-06 1.34E-05
rs1928482 0.895 0.351 0.313 2771 1.09E-03 2.24E-03
rs10979327 0.697 0.078 0.069 2840 0.178 0.220
rs17032957 0.651 0.749 0.748 2816 0.879 0.910
rs13393791 0.793 0.051 0.041 2847 0.093 0.068
rs6661074 0.806 0.474 0.434 2855 3.62E-03 2.23E-03
rs345299 0.885 0.477 0.530 2789 5.38E-05 9.05E-05
rs17633986 0.809 0.890 0.882 2822 0.553 0.331
B       
MARKER ALLELES FREQ1_cases FREQ1_CT N n.a. p-value*  
rs857989 C/G 0.130 0.106 4469 8.02E-04  
rs11178748 A/G 0.083 0.088 4432 0.499  
rs1903974 A/G 0.044 0.063 4440 2.40E-04  
rs1928482 C/T 0.350 0.319 4344 3.42E-03  
rs10979327 G/T 0.078 0.074 4456 0.506  
rs17032957 A/G 0.751 0.750 4414 0.865  
rs13393791 C/T 0.050 0.045 4441 0.365  
rs6661074 A/G 0.470 0.442 4416 0.010  
rs345299 A/C 0.481 0.531 4343 1.16E-05  
rs17633986 C/T 0.889 0.877 4451 0.100  
  1. A. Results on Taqman genotypes for 1362 breast cancer cases and 1514 controls included in the GWAS.
  2. B. Results on Taqman genotypes for all 1563 breast cancer cases and 2981 controls.
  3. *n.a. p-value: not adjusted p-value, not corrected for population stratification.