From: Genome-wide association study of susceptibility loci for breast cancer in Sardinian population
Chromosomal region | SNP | Position | Alleles | Frequency | RSQR | OR (CI 95%) | p | Gene | |
---|---|---|---|---|---|---|---|---|---|
Cases | Controls | ||||||||
1p35.1 | rs9425977 | 34238042 | C/T | 0.082 | 0.059 | 0.379 | 2.597 (1.817 - 3.709) | 9.51E-08 | CSMD2 |
1p34.1 | rs2477618 | 44271050 | C/G | 0.077 | 0.058 | 0.416 | 2.312 (1.647 -3.245) | 9.13E-07 | - |
1p13.3 | rs345299 | 108249656 | A/C | 0.465 | 0.534 | 0.957 | 0.755 (0.676 - 0.845) | 9.40E-07 | VAV3 |
1q32.1 | rs6661074 | 203605742 | A/G | 0.483 | 0.425 | 0.731 | 1.408 (1.235 - 1.605) | 3.10E-07 | LEMD1 |
2p25.3 | rs13393791 | 3239073 | C/T | 0.074 | 0.039 | 0.989 | 1.862 (1.469 - 2.361) | 1.99E-07 | TSSC1 |
2p21 | rs17032957 | 45134208 | A/G | 0.701 | 0.747 | 0.462 | 0.597 (0.500 - 0.712) | 9.17E-09 | SIX2/SIX3 |
2q37.1 | rs838436 | 232291757 | A/G | 0.908 | 0.926 | 0.308 | 0.415 (0.291 - 0.592) | 8.45E-07 | - |
3p14.1 | rs9810816 | 67158548 | C/G | 0.935 | 0.955 | 0.404 | 0.368 (0.251 - 0.541) | 1.86E-07 | - |
5q35.2 | rs17076993 | 173564400 | C/T | 0.071 | 0.049 | 0.447 | 2.507 (1.768 - 3.553) | 1.29E-07 | - |
6q23.1 | rs3777428 | 130495535 | C/T | 0.926 | 0.952 | 0.720 | 0.509 (0.387 - 0.668) | 8.48E-07 | L3MBTL3 |
7p14.2 | rs6968002 | 36531229 | C/T | 0.938 | 0.958 | 0.533 | 0.431 (0.308 - 0.603) | 6.32E-07 | AOAH |
8q24.3 | rs11785598 | 144537061 | C/T | 0.948 | 0.929 | 0.328 | 3.420 (2.223 - 5.266) | 6.40E-09 | RHPN1 |
9q22.32 | rs10512243 | 97815280 | A/G | 0.093 | 0.056 | 0.913 | 1.754 (1.411 - 2.181) | 2.78E-07 | - |
9q31.2 | rs10979327 | 110160516 | G/T | 0.112 | 0.060 | 0.632 | 3.851 (2.955 - 5.016) | 2.92E-25 | - |
9q33.3 | rs1928482 | 125472269 | C/T | 0.361 | 0.303 | 0.978 | 1.362 (1.206 - 1.538) | 4.87E-07 | DENND1A |
9q34.13 | rs1633769 | 134869098 | C/G | 0.769 | 0.803 | 0.393 | 0.558 (0.452 - 0.690) | 6.07E-08 | - |
9q34.3 | rs3811159 | 136828478 | A/G | 0.608 | 0.661 | 0.683 | 0.706 (0.616 - 0.810) | 6.07E-07 | COL5A1 |
10q21.1 | rs1903974 | 53549083 | A/G | 0.047 | 0.077 | 0.865 | 0.527 (0.409 - 0.680) | 4.38E-07 | PRKG1 |
11p12 | rs7947387 | 38902742 | A/G | 0.050 | 0.069 | 0.333 | 0.347 (0.230 - 0.523) | 2.45E-07 | - |
12q21.1 | rs11178748 | 70021794 | A/G | 0.100 | 0.078 | 0.897 | 1.673 (1.366 - 2.046) | 5.15E-07 | TSPAN8 |
12q23.3 | rs7488485 | 105789959 | C/T | 0.097 | 0.073 | 0.404 | 2.348 (1.722 - 3.198) | 3.17E-08 | RIC8B |
13q21.1 | rs9569528 | 56234110 | C/T | 0.074 | 0.051 | 0.492 | 2.481 (1.782 - 3.456) | 5.27E-08 | - |
14q23.1 | rs17097373 | 59896563 | C/T | 0.076 | 0.058 | 0.770 | 1.861 (1.448 - 2.391) | 9.43E-07 | - |
15q12 | rs17651375 | 25763160 | C/T | 0.084 | 0.056 | 0.934 | 1.761 (1.417 - 2.189) | 2.93E-07 | OCA2 |
16q12.1 | rs2193094 | 51123955 | G/T | 0.557 | 0.478 | 0.982 | 1.337 (1.198 - 1.491) | 1.70E-07 | TOX3 |
16q21 | rs8045513 | 60720397 | A/T | 0.059 | 0.088 | 0.606 | 0.430 (0.326 - 0.569) | 9.49E-10 | - |
18p11.22 | rs17436811 | 10080771 | C/T | 0.084 | 0.058 | 0.644 | 2.002 (1.536 - 2.608) | 2.20E-07 | - |
19q13.31 | rs17725531 | 49018018 | G/T | 0.140 | 0.099 | 0.930 | 1.560 (1.311 - 1.858) | 5.82E-07 | - |
20p12.2 | rs6039942 | 10376146 | A/G | 0.100 | 0.068 | 0.623 | 2.005 (1.565 - 2.565) | 2.13E-08 | C20orf94 |
21q22.11 | rs2833424 | 31774071 | A/G | 0.293 | 0.239 | 0.985 | 1.365 (1.206 - 1.544) | 8.42E-07 | TIAM1 |
21q22.11 | rs963950 | 33438577 | C/T | 0.930 | 0.883 | 0.986 | 1.742 (1.432 - 2.119) | 1.24E-08 | IFNAR2 |
21q22.13 | rs857989 | 38042001 | C/G | 0.154 | 0.111 | 0.896 | 1.537 (1.301 - 1.816) | 3.72E-07 | KCNJ6 |
22q12.3 | rs6000351 | 35340813 | A/G | 0.093 | 0.069 | 0.445 | 2.100 (1.556 - 2.835) | 7.44E-07 | CACNG2 |