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Table 1 Table of shRNA clones eliciting frequency changes with a FDR ≤ 0.01

From: A pooled shRNA screen for regulators of primary mammary stem and progenitor cells identifies roles for Asap1 and Prox1

Vendor clone ID Gene logFC logCPM PValue FDR
V2LMM_6871 MYOG −2.5393 9.6584 5.24E-39 4.61E-37
V2LMM_68084 ASAP1 1.2699 13.5019 7.53E-29 6.62E-27
V2LMM_63192 LASS6 −1.5047 12.8189 3.47E-23 3.06E-21
V2LMM_64405 NR0B1 −1.2213 12.6156 3.74E-14 3.29E-12
V2LMM_189334 SOX21 0.7841 14.1110 7.57E-11 6.66E-09
V2LMM_82812 Id1 −0.4067 14.0413 1.58E-10 9.96E-09
V2LMM_73029 Myst1 −0.3976 13.7299 4.37E-10 1.38E-08
V2LMM_62263 TBP −0.9262 6.8162 5.90E-10 2.60E-08
V2LMM_25195 TCEA2 −0.9252 13.0207 6.44E-10 2.69E-08
V2LMM_13506 NKX3-1 −0.9163 13.0783 9.16E-10 2.69E-08
V2LMM_54422 POU1F1 −0.9631 12.8253 1.91E-09 8.39E-08
V2LMM_9553 FOXN1 −1.0459 12.0477 8.86E-09 3.90E-07
V2LMM_259235 FOXC2 0.6794 11.6227 3.67E-08 1.61E-06
V2LMM_53719 TEF −0.7084 12.9529 3.54E-08 2.24E-06
V2LMM_27467 NFE2L1 −0.7027 12.1790 5.10E-08 2.24E-06
V2LMM_937 MNT 0.8370 13.6556 1.60E-07 4.71E-06
V2LMM_20404 MAFG 0.7503 14.4488 4.96E-07 1.09E-05
V2LMM_218286 SOX9 0.5992 14.6443 5.34E-07 1.57E-05
V2LMM_29411 Ezh2 0.3074 13.6843 1.37E-06 2.89E-05
V2LMM_64907 NR1H3 −0.6947 13.0997 3.26E-06 5.74E-05
V2LMM_226932 NOTCH2 −0.7216 12.6071 7.35E-07 6.47E-05
V2LMM_22166 NR1H4 0.6672 14.0499 7.62E-06 1.12E-04
V2LMM_70598 Klf4 −0.2842 13.7153 7.81E-06 1.23E-04
V2LMM_29885 Lmo2 −0.2790 13.3138 1.25E-05 1.57E-04
V2LMM_85045 ZFP449 −0.5770 13.6233 6.17E-06 1.81E-04
V2LMM_27178 TRPS1 −0.7064 12.9042 9.70E-06 2.13E-04
V2LMM_7277 NRARP 0.5023 13.3971 8.02E-06 2.35E-04
V2LMM_71087 LEF1 −0.6382 13.1210 1.87E-05 2.35E-04
V2LMM_37331 OVOL2 −0.4958 12.5577 1.11E-05 2.45E-04
V2LMM_82311 FOXJ1 −0.4883 13.7075 1.41E-05 2.48E-04
V2LMM_30422 Ezh2 0.2667 13.9399 2.73E-05 2.87E-04
V2LMM_86479 HLF 0.6524 13.6835 6.89E-06 3.03E-04
V2LMM_73715 KLF5 −0.6192 12.8163 3.27E-05 3.60E-04
V2LMM_77459 Tcf4 −0.2612 13.7487 4.01E-05 3.61E-04
V2LMM_87315 ANKRD46 0.6747 13.9989 2.27E-05 3.99E-04
V2LMM_249987 ANKRD33 0.5109 14.5653 1.82E-05 4.00E-04
V2LMM_34449 THRB 0.6078 13.7210 4.51E-05 4.32E-04
V2LMM_34394 MRG2 0.6048 13.8720 4.91E-05 4.32E-04
V2LMM_71843 TCF19 −0.5495 13.0225 6.03E-06 5.31E-04
V2LMM_162758 ETS1 0.5252 13.3887 1.45E-05 6.38E-04
V2LMM_103225 Rbbp8 0.2503 13.5222 8.51E-05 6.70E-04
V2LMM_3550 TCF21 0.4517 13.0423 5.97E-05 8.76E-04
V2LMM_61869 TBP −0.6028 13.2274 3.29E-05 9.64E-04
V2LMM_110117 NFATC3 −0.7358 13.2152 4.56E-05 1.34E-03
V2LMM_70871 NR1I3 −0.6202 13.2914 9.95E-05 1.36E-03
V2LMM_196851 GATA6 0.6165 13.4939 1.08E-04 1.36E-03
V2LMM_86811 Klf8 −0.2331 14.0270 2.43E-04 1.61E-03
V2LMM_14204 Cbx4 0.2323 14.0165 2.55E-04 1.61E-03
V2LMM_103224 Rbbp8 −0.2249 13.7322 4.06E-04 2.33E-03
V2LMM_2021 MTA3 0.5498 13.3661 2.69E-05 2.37E-03
V2LMM_18790 CLOCK 0.6957 14.2333 1.13E-04 2.49E-03
V2LMM_8902 2410018C20RIK −0.4430 13.8888 1.46E-04 2.57E-03
V2LMM_7952 NR2C1 0.6810 13.8576 1.57E-04 2.76E-03
V2LMM_65378 E2F6 0.4731 12.6660 9.67E-05 2.84E-03
V2LMM_14131 Id3 0.2176 14.1862 6.16E-04 3.23E-03
V2LMM_4616 Cbx4 0.2158 14.2122 6.73E-04 3.26E-03
V2LMM_81587 Klf9 −0.2144 13.9803 7.36E-04 3.31E-03
V2LMM_50581 NR2F2 −0.5745 12.8242 3.14E-04 3.45E-03
V2LMM_71013 HNRPAB −0.5309 13.3310 8.03E-05 3.53E-03
V2LMM_71313 CML3 −0.6586 13.3786 2.59E-04 3.80E-03
V2LMM_46526 PROX1 0.6463 13.6892 3.35E-04 4.21E-03
V2LMM_63443 MAFB −0.4007 13.4709 3.65E-04 4.59E-03
V2LMM_75410 ASB4 −0.3952 13.3161 4.41E-04 4.85E-03
V2LMM_87318 ANKRD46 0.3883 13.7227 5.46E-04 5.11E-03
V2LMM_88650 6430502M16RIK −0.3867 13.5604 5.81E-04 5.11E-03
V2LMM_194038 HOXD8 0.4901 13.8093 1.84E-04 5.39E-03
V2LMM_71230 NR1I3 −0.6275 12.9976 5.00E-04 5.50E-03
V2LMM_79666 PAX8 −0.5296 13.7022 2.58E-04 5.67E-03
V2LMM_64571 GCDH 0.4455 13.2693 2.62E-04 5.76E-03
V2LMM_50262 VDR 0.5204 13.8960 3.27E-04 5.76E-03
V2LMM_66887 LASS4 −0.4153 13.1732 3.99E-04 5.85E-03
V2LMM_71060 GTF2H4 −0.4379 13.3758 3.04E-04 6.58E-03
V2LMM_5760 MYC 0.4271 13.4915 4.15E-04 6.58E-03
V2LMM_6641 PYCARD 0.4248 13.2027 4.49E-04 6.58E-03
V2LMM_29358 TBX20 −0.5067 13.3472 4.76E-04 6.98E-03
V2LMM_212338 PPP1R16B 0.3734 13.6841 8.86E-04 7.09E-03
V2LMM_68781 OTX1 −0.6004 13.2971 8.58E-04 8.39E-03
V2LMM_71737 HOXA5 0.4088 13.7302 7.23E-04 9.08E-03
V2LMM_67978 LASS4 0.3995 12.8183 9.89E-04 9.91E-03
V2LMM_62940 IRX6 −0.3977 13.5485 1.01E-03 9.91E-03