Figure 1
From: No significant viral transcription detected in whole breast cancer transcriptomes
Computational pipelines for the detection of non-human sequences. Five different pipelines were used in this study. In pipelines 1, 2 and 3 raw reads were first aligned to the human genome and the unmapped reads were then used for alignment to the viral database with BWA, for alignment to the viral database with BLAST, and for de novo assembly and alignment to the viral database, respectively. In pipelines 4 and 5, raw reads were given as input to TriageTools and VirusSeq, respectively.