Up-regulated in CUP | ||||
---|---|---|---|---|
Gene Set name | Transcripts | Overlap | k/K | p value |
PUJANA_BRCA1_PCC_NERWORK | Â | Â | Â | Â |
Genes constituting the BRCA1-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient, PCC > = 0.4) with that of BRCA1 | 1671 | 159 | 0.0952 | 0.00E + 00 |
KINSEY_TARGETS_OF_EWSR1_FLII_UP | Â | Â | Â | Â |
Genes up-regulated in TC71 and EWS502 cells (Ewing’s sarcoma) upon knockdown of theEWSR1-FLII fusion | 1281 | 133 | 0.1038 | 0.00E + 00 |
PUJANA_ATM_PCC_NETWORK | Â | Â | Â | Â |
Genes constituting the ATM-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient, PCC > = 0.4) with that of ATM | 1461 | 152 | 0.104 | 0.00E + 00 |
PUJANA_CHEK2_PCC_NETWORK | Â | Â | Â | Â |
Genes constituting the CHEK2-PCC network of transcripts whose expression positively correlates (Pearson correlation coefficient, PCC > 0.4) with that of CHEK2 | 782 | 89 | 0.1138 | 0.00E + 00 |
DODD_NASOPHARYNGEAL_CARCINOMA_DN | Â | Â | Â | Â |
Genes down-regulated in nasopharyngeal carcinoma (NPC) compared to the normal tissue. | 1375 | 157 | 0.1142 | 0.00E+00 |
RODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_UP | Â | Â | Â | Â |
Genes up-regulated in anaplastic thyroid carcinoma (ATC) compared to normal tissue. | 721 | 93 | 0.129 | 0.00+00 |
MILI_PSEUDOPODIA_HAPTOTAXIS_UP | Â | Â | Â | Â |
Transcripts enriched in pseudopodia of NIH/3T3 cells (fibroblast) in response to haptotactic migratory stimulus by fibronectin, FN1 | 552 | 74 | 0.1341 | 0.00E+00 |
RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_UP | Â | Â | Â | Â |
Genes up-regulated in poorly diffrentiated thyroid carcinoma (PDTC) compared to normal thyroid tissue. | 640 | 94 | 0.1469 | 0.00E+00 |
DECOSTA_UV_RESPONSE_VIA_ERCC3_DN | Â | Â | Â | Â |
Genes down-regulated transcripts in fibrolasts expressing ethier XP/CS or TDD mutant forms of ERCC3 [Gene ID=2071], after UVC irradiation | 855 | 126 | 0.1474 | 0.00E+00 |
DECOSTA_UV_RESPONSE_VIA_ERCC3_COMMON_DN | Â | Â | Â | Â |
Common down -regulated transcripts in fibroblasts expressing either XP/CS orTDD mutant forms of ERCC3 [Gene ID=2071], after UVC irradiation | 420 | 64 | 0.1524 | 0.00E+00 |
OSMAN_BLADDER_CANCER_UP | Â | Â | Â | Â |
Common down-regulated in blood samples from bladder cancer patients | 402 | 57 | 0.1418 | 5.55E-16 |
SENUPTA_NASOPHARYNGEAL_CARCINOMA_WITH_LMP1_UP | Â | Â | Â | Â |
Genes up-regulated in nasopharyngeal carcinoma (NPC) positive for LMP1 [Gene ID=9260], a latent gene of Epstein Barr virus (EBV) | 399 | 56 | 0.1404 | 155E-15 |
SENUPTA_NASOPHARYNGEAL_CARCINOMA_UP | Â | Â | Â | Â |
Genes up-regulated in nsopharyngeal carcinoma relative to the normal tissue. | 286 | 46 | 0.1608 | 3.33E+15 |
PUJANA_XPRSS_INT_NETWORK | Â | Â | Â | Â |
Genes constituting the XPRSS-Int network: intersection of genes whose expression correlates with BRCA1, BRCA2, ATM, and CHEK2 [Gene ID=672, 675, 472, 11200] in a compendium of normal tissues. | 167 | 34 | 0.2036 | 1.21E-14 |
Down-regulated in CUP | ||||
Gene Set Name | Transcripts | Overlap | k/K | p value |
SHEN_SMARCA2_TARGETS_DN | Â | Â | Â | Â |
Genes whose expression negatively correlated with that of SMARCA2 [GeneID=6595] in prostate cancer samples | 360 | 73 | 032028 | 0.00E+00 |
GINESTIER_BREAST_CANCER_ZNF217_AMPLIFIED_DN | Â | Â | Â | Â |
Genes doen-regulated in non-metastic breast cancer tumors having type 1 amplifications in the 20q13 region; involves ZNF217 [Gene ID=7764] locus only. | 336 | 49 | 0.1458 | 7.71E-11 |