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Table 2 Primer pairs for amplification of marker gene sequences for RT-PCR expression and immunobead RT-PCR analyses.

From: Long term survival following the detection of circulating tumour cells in head and neck squamous cell carcinoma

Primer Name

Primer Sequence

5'-3'

Annealing Temperature

Product Size

ELF3 F

CTCGGAGCTCCCACTCCTCAGA

68°C

188 bp

ELF3 R

GCTCTTCTTGCCCTCGAGACAGT

  

EphB4 F

CCCCAGGGAAGAAGGAGAGCTG

68°C

251 bp

EphB4 R

GCCCACGAGCTGGATGACTGTG

  

EGFR F

TGTGAGGTGGTCCTTGGGAATTTGG

66°C

339 bp

EGFR R

TGCTGACTATGTCCCGCCACTGGA

  

CEA F

GGTTGGGGTTGCTCTGATATAGCAGC

68°C

97 bp

CEA R

GCTGTTGCAAATGCTTTAAGGAAGAAGC

  

CK19 F

GACTACAGCCACTACTACACGACC

68°C

743 bp

CK19 R

AGCCGCGACTTGATGTCCATGAGCC

  

EpCam F

GGACCTGACAGTAAATGGGGAAC

68°C

186 bp

EpCam R

CTCTTCTTTCTGGAAATAACCAGCAC

  
  1. The sequences of forward (F) and reverse (R) primers for each of the markers are shown in 5' to 3' direction and were used at the indicated annealing temperature to generate a PCR product of the size indicated in base pairs (bp).