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Table 2 Primers for amplification of the fragments containing SNP markers.

From: Partial loss of heterozygosity events at the mutated gene in tumors from MLH1/MSH2 large genomic rearrangement carriers

SNP

Forward primer sequence (5' → 3')

Reverse primer sequence (5' → 3')

bpa

Gene MLH1

c.1- 93G>A

CAACCCACAGAGTTGAGAAATTT

GCTCAACGGAAGTGCCTT

152

c.453+79A>G

TGGAAAACTGAAAGCCCC

TTAGAGGATATCTTGGGACCTCC

201

c.655A>G

CGTGGACAATATTCGCTCC

CTAAAGCAAACTCTTAACACACATAATATC

156

c.790+955C>A

CCAGCTGTAAATGTTTCAAAATAT

AACATTTTCTGAGCCTTGATTAAA

200

c.791- 1406C>T

CAGAGTACAGTGACATTAATGAT

TCTCTCTGAACAGATTTAGATGA

183

c.791- 488A>G

TGATACCATTTCTGTGCCATTTT

GGCCAGCACTATTATAGACGT

157

c.1038+86T>C

GTCAGGGCGCTTCTCATC

GGAACAACAGCACAATACCTT

173

c.1039- 78A>G

ATAATTTTAAGATTATAAGGATTTTG

GTGGAGAGACTCAGAATAAGA

186

c.1668- 19A>G

ACAGCCAGGCAGAACTATTTC

TGAGTATCTGGTAGAACAGTTCTTC

153

c.1990- 121C>T

CCTGCTCTCATCCCCACT

ACCTGGTCCAAAGAAATTCA

178

Gene MSH2

c.1076+1681G>T

AACGATATTGGAATGATTGGATC

ACTTGCAAATTACCCAGTCCTT

177

c.1077- 80G>A

AAATGGAATTTTGAGCTGATTT

ATCTTCTACAAAAGCTTCCACTAA

134

c.1276+1349T>A

GTTGTTATGTCTAATACATAAAGC

TCAAAACGTATGTTTTAATGGTTC

157

c.1276+1394A>T

GTTGTTATGTCTAATACATAAAGC

TCAAAACGTATGTTTTAATGGTTC

157

c.1277- 212T>A

CATGTTTCTGCATCTATATTACTT

TAAACAAGCATCATTTGATCCAAA

201

c.1277- 118G>A

CATGTTTCTGCATCTATATTACTT

TAAACAAGCATCATTTGATCCAAA

201

c.1386+719T>C

TCAGTCTTAGCCTCCCAAAAT

CGACAACTATTTAGGAGATGCA

131

c.1387- 914A>G

AGTCTCAGTATGTCACCTAGG

TAGCAGTGCGCACCTGTAGT

131

c.1511- 91G>T

CAAGTAAGTAGTATTTGAATCTTTTCTG

GCACTGGAATCCAGTTTAATCT

202

c.1511- 9A>T

CAAGTAAGTAGTATTTGAATCTTTTCTG

GCACTGGAATCCAGTTTAATCT

202

c.1661+12G>A

TCCAGAAGAATGGTGTTAAATTT

TTAGTAAAACTTATCATAGAACATTCAC

120

c.1759+107A>G

GGCTTTTGGTAACAGAAGAAAAA

CTGCCATTTTTTGTTTCTATGTG

176

c.1759+183G>A

GGCTTTTGGTAACAGAAGAAAAA

CTGCCATTTTTTGTTTCTATGTG

176

c.1760- 1207C>T

TAATTAGGTCTGCTTGGCCATT

CAGAACATTCAAGATAAAAGCATT

166

c.2006- 6T>C

ACATCTTTGGGCAGGCTG

CCATGAGTACTATCACCCCA

214

c.2210+175G>A

GTCTTAGTTTAATAGTTGTTTTCC

ATTCCAGGAAGTGTGAACAGT

198

c.2210+274T>G

GTCTTAGTTTAATAGTTGTTTTCC

ATTCCAGGAAGTGTGAACAGT

198

c.2635- 214T>C

CCAGTATTCTTTGTAAACCTTGA

GTCTCAAACTCCTCCCACATT

156

  1. a size of amplicon in base pairs (bp); Note: several SNPs are located on the same amplicon