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Table 2 List of genes selected for RQ-RT-PCR validation

From: A 7 gene expression score predicts for radiation response in cancer cervix

GENE SYMBOL GENE NAME ASSAY ID AMPLICON SIZE
TRAPPC6A trafficking protein particle complex 6A Hs00225487_m1 133
FLJ90231 Galactosidase, beta 1-like 3 Hs00293572_m1 109
MRCL3 myosin regulatory light chain MRCL3 Hs00272402_m1 105
ASB16 ankyrin repeat and SOCS box-containing 16 Hs00365575_m1 79
C11orf9 chromosome 11 open reading frame 9 Hs00203205_m1 56
PLA2G6 phospholipase A2, group VI (cytosolic, calcium-independent) Hs00185926_m1 89
YAP1 Yes-associated protein 1, 65 kDa Hs00371735_m1 64
BIRC2 baculoviral IAP repeat-containing 2 Hs01112284_m1 84
MMP3 matrix metallopeptidase 3 (stromelysin 1, progelatinase) Hs00968308_m1 98
FST follistatin Hs00246260_m1 105
DCUN1D5 DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae) Hs00260376_m1 61
HCRTR1 hypocretin (orexin) receptor 1 Hs00173513_m1 78
TMEM123 transmembrane protein 123 Hs00364685_m1 56
ASPN asporin Hs00214395_m1 72
CCL18 chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated) Hs00268113_m1 83
CTSC cathepsin C Hs00175188_m1 71
SDCCAG8 serologically defined colon cancer antigen 8 Hs00394864_m1 79
THOC6 THO complex 6 homolog (Drosophila) Hs00738020_g1 67
CES2 carboxylesterase 2 (intestine, liver) Hs00187279_m1 88
OPTC opticin Hs00205039_m1 71
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 Hs01118009_m1 80
UBE2C ubiquitin-conjugating enzyme E2C Hs00738962_m1 91
  1. The last 2 genes were found to be overexpressed in Failed to compared to NED samples, although they had been included initially as genes differentially expressed between the tumours/CIN3 and normal cervix.