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Table 2 Genes differentially expressed between oral tongue tumor and case-matched histologically normal mucosae (TN paired, n = 20)

From: Oral tongue cancer gene expression profiling: Identification of novel potential prognosticators by oligonucleotide microarray analysis

Accession Sequence identity (GenBank/EMBL) Average log fold change
Nuclear proteins (transcription factors, DNA processing enzymes)
AJ001381 Mutated allele of a myosin class I, myh-1c 5.24
D28364 Annexin II 4.61
M92383 Thymosin beta-10 3.75
U22431 Hypoxia-inducible factor 1 alpha (HIF-1 alpha) 3.47
M86400 Phospholipase A2 3.27
L19779 Histone H2A.2 2.99
U10860 Guanosine 5-monophosphate synthase 2.71
U12472, U21689 Glutathione S-transferase (GST phi) 2.70
J04173 Phosphoglycerate mutase (PGAM-B) 2.69
AL009179 Histone H2B 2.58
D13748 Eukaryotic initiation factor 4AI 2.57
S79639 Exostosin 1 (EXT1) 2.39
AL049650 snRNP (small nuclear ribonucleoprotein particle) protein B) 2.35
  Ras-Like Protein Tc4 2.27
D26599 Proteasome subunit HsC7-I 2.04
X82554 SPHAR gene for cyclin-related protein -1.89
U40490 Human nicotinamide nucleotide transhydrogenase -3.53
D83407 ZAKI-4 in human skin fibroblast -5.31
Cytokines, growth factors and receptors
NM001953, M63193 Platelet-derived endothelial cell growth factor (ECGF1) 15.89
M77349 Transforming growth factor-beta induced gene product (BIGH3) 6.17
U73377 p66shc (SHC) 2.37
M35252 Tumor associated antigen CO-029 -9.42
Signaling molecules
AF054183 GTP binding protein 2.00
U78525 Eukaryotic translation initiation factor (eIF3) 1.89
Metabolic enzymes, transporters, ion channels
AF042498 Rod photoreceptor CNG-channel beta subunit (RCNC2) 6.73
M94856 Fatty acid binding protein homologue (PA-FABP) 5.24
M91670 Ubiquitin carrier protein (E2-EPF) 3.52
J03626 UMP synthase 2.54
D50840 Ceramide glucosyltransferase 2.54
U89606 Pyridoxal kinase 2.41
Accession Sequence identity (GenBank/EMBL) Average log fold change
X52851 Cyclophilin 2.22
X97074 Clathrin-associated protein 2.07
S81003 L-UBC = ubiquitin conjugating enzyme 2.04
U09510 Glycyl-tRNA synthetase 1.96
D25547 PIMT isozyme I 1.87
AF052941 DAP-kinase related protein 1 -2.12
D16294 Mitochondrial 3-oxoacyl-CoA thiolase -3.59
Extracellular proteins
M13509 Skin collagenase (MMP1) 34.18
X07820 Stromelysin-2 (MMP7) 15.89
L10343 Elafin 9.95
L23808 Macrophage metalloelastase (MME, MMP12) 7.67
U29091 Human selenium-binding protein (hSBP) -5.41
Others
AB018342 KIAA0799 4.44
D21261 KIAA0120 2.59
AB014515 KIAA0615 2.42
AB007889 KIAA0429 2.09
AA586894 EST 14.57
AA010777 EST 14.12
L05424 EST 5.76
AI885852 EST 4.03
Z98946 EST 3.42
AC002073 EST 3.17
AF053356 EST 1.73
AB028994 KIAA1071 -6.08
D42047 KIAA0089 -4.68
AB007972 KIAA0503 -3.96
AF007153 EST -5.35
AI674208 EST -3.57
AL080059 EST -3.12
AL049381 EST -2.93
AW021542 EST -2.60
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