From: Gene expression variation to predict 10-year survival in lymph-node-negative breast cancer
A | |||||
---|---|---|---|---|---|
Gene Symbol | Accesion number | Gene Name | Expression deceased vs 10-year survivors | Gene Ontology, Function | van't Veer/Wang |
ADA | NM_000022 | adenosine deaminase | Higher | adenosine deaminase activity, hydrolase activity | 1/1 |
BCAT1 | NM_005504 | branched chain aminotransferase 1, cytosolic | Higher | branched-chain-amino-acid transaminase activity, catalytic activity, transferase activity | 1/1 |
C9orf164 | NM_006378 | chromosome 9 open reading frame 164 | Higher | 0/0 | |
CCDC99 | NM_017785 | coiled-coil domain containing 99 | Higher | 1/0 | |
CCNB1IP1 | NM_182849 | cyclin B1 interacting protein 1 | Higher | ligase activity, metal ion binding | 1/1 |
COMMD9 | NM_014186 | COMM domain containing 9 | Higher | 0/1 | |
CPS1 | NM_001875 | carbamoyl-phosphate synthetase 1, mitochondrial | Higher | ATP binding, carbamoyl-phosphate synthase (ammonia) activity, ligase activity, nucleotide binding, protein binding | 1/2 |
E2F2 | NM_004091 | E2F transcription factor 2 | Higher | protein binding, transcription factor activity | 1/1 |
F2 | NM_000506 | coagulation factor II (thrombin) | Higher | calcium ion binding, receptor binding, thrombin activity, thrombin activity | 1/1 |
GGH | NM_003878 | gamma-glutamyl hydrolase (conjugase, folylpolygammaglutamyl hydrolase) | Higher | exopeptidase activity, hydrolase activity | 1/1 |
GIT2 | NM_014776 | G protein-coupled receptor kinase interactor 2 | Higher | GTPase activator activity, metal ion binding | 2/2 |
GNG10 | NM_004125 | guanine nucleotide binding protein (G protein), gamma 10 | Higher | GTPase activity, heat shock protein binding, signal transducer activity | 1/0 |
HPS5 | NM_007216 | Hermansky-Pudlak syndrome 5 | Higher | protein binding | 1/1 |
KCNAB2 | NM_003636 | potassium voltage-gated channel, shaker-related subfamily, beta member 2 | Higher | ion channel activity, oxidoreductase activity, potassium channel regulator activity, potassium ion binding | 1/0 |
MGC13057 | NM_032321 | hypothetical protein MGC13057 | Higher | 0/0 | |
MRTO4 | NM_016183 | mRNA turnover 4 homolog (S. cerevisiae) | Higher | 0/1 | |
MTERF | NM_006980 | mitochondrial transcription termination factor | Higher | DNA binding, double-stranded DNA binding, transcription termination factor activity | 1/1 |
MYO1G | NM_033054 | myosin IG | Higher | ATP binding, motor activity | 0/0 |
NPM3 | NM_006993 | nucleophosmin/nucleoplasmin, 3 | Higher | nucleic acid binding | 1/0 |
PIR | NM_003662 | pirin (iron-binding nuclear protein) | Higher | metal ion binding, transcription cofactor activity | 1/1 |
PLEKHM2 | XM_290944 | pleckstrin homology domain containing, family M (with RUN domain) member 2 | Higher | oxidoreductase activity | 0/0 |
PRPS1L1 | NM_175886 | phosphoribosyl pyrophosphate synthetase 1-like 1 | Higher | kinase activity, lipoate-protein ligase B activity, magnesium ion binding, ribose phosphate diphosphokinase activity, transferase activity | 0/1 |
RAB23 | NM_183227 | RAB23, member RAS oncogene family | Higher | GTP binding, nucleotide binding | 1/1 |
RCN1 | NM_002901 | reticulocalbin 1, EF-hand calcium binding domain | Higher | calcium ion binding | 0/0 |
RP5-1077B9.4 | NM_021933 | invasion inhibitory protein 45 | Higher | 1/0 | |
SALL4 | NM_020436 | sal-like 4 (Drosophila) | Higher | DNA binding, metal ion binding, nucleic acid binding, protein binding | 0/0 |
SERPINB9 | NM_004155 | serpin peptidase inhibitor, clade B (ovalbumin), member 9 | Higher | protein binding, serine-type endopeptidase inhibitor activity | 1/2 |
SLC35B4 | NM_032826 | solute carrier family 35, member B4 | Higher | UDP-N-acetylglucosamine transporter activity, UDP-xylose transporter activity, nucleotide-sugar transporter activity, sugar porter activity | 0/0 |
SPATA5 | NM_145207 | spermatogenesis associated 5 | Higher | ATP binding, nucleoside-triphosphatase activity, nucleotide binding | 0/0 |
TM4SF5 | NM_003963 | transmembrane 4 L six family member 5 | Higher | 1/0 | |
TRPV2 | NM_016113 | transient receptor potential cation channel, subfamily V, member 2 | Higher | calcium ion binding, ion channel activity | 2/0 |
B | |||||
Gene Symbol | Accesion number | Gene Name | Expression deceased vs 10-year survivors | Gene Ontology, Function | van't Veer/Wang |
ARFIP1 | NM_001025595 | ADP-ribosylation factor interacting protein 1 (arfaptin 1) | Lower | identical protein binding | 1/0 |
ARSD | NM_001669 | arylsulfatase D | Lower | arylsulfatase activity, calcium ion binding, hydrolase activity | 2/2 |
C1orf43 | NM_015449 | chromosome 1 open reading frame 43 | Lower | 1/0 | |
C4orf26 | NM_178497 | chromosome 4 open reading frame 26 | Lower | 0/0 | |
CCDC24 | NM_152499 | coiled-coil domain containing 24 | Lower | 0/0 | |
CUL7 | NM_014780 | cullin 7 | Lower | protein binding | 1/2 |
EDEM3 | NM_025191 | ER degradation enhancer, mannosidase alpha-like 3 | Lower | calcium ion binding, mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, peptidase activity | 0/0 |
FAAH | NM_001441 | fatty acid amide hydrolase | Lower | amidase activity, hydrolase activity, receptor binding | 2/1 |
FXYD3 | NM_005971 | FXYD domain containing ion transport regulator 3 | Lower | chloride ion binding, ion channel activity | 1/0 |
GOLT1A | NM_198447 | golgi transport 1 homolog A (S. cerevisiae) | Lower | 1/0 | |
NEIL1 | NM_024608 | nei endonuclease VIII-like 1 (E. coli) | Lower | DNA N-glycosylase activity, damaged DNA binding, hydrolase activity, acting on glycosyl bonds, lyase activity, oxidized purine base lesion DNA N-glycosylase activity, zinc ion binding | 1/0 |
OR7E91P | NR_002185 | olfactory receptor, family 7, subfamily E, member 91 pseudogene | Lower | receptor activity | 0/0 |
PHLDA3 | NM_012396 | pleckstrin homology-like domain, family A, member 3 | Lower | 1/0 | |
PLEKHA6 | NM_014935 | pleckstrin homology domain containing, family A member 6 | Lower | 1/1 | |
RORC | NM_005060 | RAR-related orphan receptor C | Lower | metal ion binding, sequence-specific DNA binding, steroid hormone receptor activity, transcription factor activity | 1/1 |
TAF5L | NM_014409 | TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65 kDa | Lower | transcription factor activity | 1/1 |
TMEM63A | NM_014698 | transmembrane protein 63A | Lower | 1/4 | |
ZNF497 | NM_198458 | zinc finger protein 497 | Lower | metal ion binding, nucleic acid binding | 0/0 |
ZNF691 | NM_015911 | zinc finger protein 691 | Lower | metal ion binding, nucleic acid binding | 0/0 |
ZNF692 | NM_017865 | zinc finger protein 692 | Lower | metal ion binding, nucleic acid binding | 1/0 |