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Table 4 Genes differentially expressed in lobular versus ductal invasive carcinomas by rank products and/or pairwise analysis
| Probe Set1 | Gene Symbol | Gene Title | Rank products | Pairwise comparison |
|---|---|---|---|---|
| Fold-change | Incr/Decr | |||
| Cell adhesion | ||||
| 201131_s_at | CDH1↓ | Cadherin 1, type 1, E-cadherin (epithelial) | -6.0 | 3/19 |
| 207169_x_a | DDR1↓ | Discoidin domain receptor family, member 1 | n | 5/19 |
| 204776_at | THBS4↑ | Thrombospondin 4 | n | 19/2 |
| 219087_at | ASPN↑ | Asporin (LRR class 1) | 3.9 | 23/0 |
| Wnt signalling | ||||
| 223168_at | RHOU↓ | RAS homolog gene family, member U | n | 2/20 |
| 203230_at | DVL1↑ | Dishevelled, dsh homolog 1 (Drosophila) | n | 20/0 |
| Protein ubiquitination | ||||
| 215392_at | USP3↓ | Ubiquitin specific peptidase 3 | -5.0 | 1/21 |
| 218247_s_at | RKHD2↓ | Ring finger and KH domain containing 2 | -4.6 | 0/19 |
| 1569472_s_at | TTC3↓ | Tetratricopeptide repeat domain 3 | -4.5 | 0/23 |
| Regulation of transcription | ||||
| 226115_at | AHCTF1↓ | AT hook containing transcription factor 1 | -4.0 | 0/22 |
| 201587_s_at | IRAK1↓ | Interleukin-1 receptor-associated kinase 1 | n | 2/19 |
| 202599_s_at | NRIP1↓ | Nuclear receptor interacting protein 1 | n | 0/19 |
| 201773_at | ADNP↓ | Activity-dependent neuroprotector | n | 0/20 |
| 203637_s_at | MID1↑ | Midline 1 (Opitz/BBB syndrome) | 4.0 | 20/0 |
| 235444_at | FOXP1↑ | Forkhead box P1 | n | 19/4 |
| Electron and protein transport | ||||
| 204351_at | S100P↓ | S100 calcium binding protein P | -5.3 | 0/19 |
| 225177_at | RAB11FIP1↓ | RAB11 family interacting protein 1 (class I) | -3.5 | 2/21 |
| 204041_at | MAOB↑ | Monoamine oxidase B | 3.5 | 20/4 |
| 212902_at | SEC24A↑ | SEC24 related gene family, member A | 3.5 | 19/2 |
| Cell cycle regulation, cell proliferation and signaling | ||||
| 204170_s_at | CKS2↓ | CDC28 protein kinase regulatory subunit 2 | -4.8 | 2/20 |
| 207414_s_at | PCSK6↓ | Proprotein convertase subtilisin/kexin type 6 | n | 4/19 |
| 209678_s_at | PRKCI↓ | Protein kinase C, iota | n | 0/22 |
| 209817_at | PPP3CB↓ | Protein phosphatase 3, catalytic subunit, beta isoform (calcineurin A beta) | n | 0/24 |
| 201324_at | EMP1↑ | Epithelial membrane protein 1 | n | 21/0 |
| Metabolism and enzyme activity | ||||
| 205509_at | CPB1↓ | Carboxypeptidase B1 (tissue) | -11.1 | 0/19 |
| 223746_at | STK4↓ | Serine/threonine kinase 4 | -4.5 | 2/20 |
| 225491_at | SLC1A2↓ | Solute carrier family 1 (glial high affinity glutamate transporter), member 2 | -4.1 | 0/20 |
| 211379_x_at | B3GALT3↓ | UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 3 | -4.0 | 0/20 |
| 219073_s_at | OSBPL10↓ | Oxysterol binding protein-like 10 | -4.0 | 1/21 |
| 229366_at | CRBN↓ | Cereblon | -3.6 | 0/20 |
| 226350_at | CHML↓ | Choroideremia-like (Rab escort protein 2) | n | 0/24 |
| 217717_s_at | YWHAB↓ | Tyrosine 3-monooxygenase/tryptophan 5-mono-oxygenase activation protein, beta polypeptide | n | 1/20 |
| 49452_at | ACACB↑ | Acetyl-Coenzyme A carboxylase beta | n | 19/0 |
| 220770_s_at | LOC63920↑ | Transposon-derived Buster3 transposase-like | 5.3 | 24/0 |
| Actin and cytoskeletal protein binding | ||||
| 211776_s_at | EPB41L3↓ | Erythrocyte membrane protein band 4.1-like 3 | -5.3 | 0/21 |
| 201341_at | ENC1↓ | Ectodermal-neural cortex (with BTB-like domain) | n | 19/3 |
| Nuclear components | ||||
| 218585_s_at | DTL↓ | Denticleless homolog (Drosophila) | -4.6 | 1/19 |
| 225706_at | GLCCI1↓ | Glucocorticoid induced transcript 1 | -4.5 | 0/25 |
| 241863_x_at | TTC14↓ | Tetratricopeptide repeat domain 14 | -4.4 | 1/20 |
| 228069_at | FAM54A↓ | Family with sequence similarity 54, member A | -3.8 | 0/20 |
| 208576_s_at | HIST1H3B↓ | Histone 1, H3b | -3.3 | 1/19 |
| Other | ||||
| 1568838_at | --- ↓ | Full-length cDNA clone CS0DF033YE17 of Fetal brain of Homo sapiens (human) | -5.0 | 1/20 |
| 226067_at | C20orf114↓ | Chromosome 20 open reading frame 114 | -4.9 | 0/19 |
| 1553979_at | --- ↓ | Homo sapiens, clone IMAGE:3906992, mRNA | -4.1 | 0/19 |
| 230534_at | MGC15634↓ | Hypothetical protein MGC15634 | -3.6 | 2/20 |
| 226671_at | --- ↓ | CDNA clone IMAGE:4797120 | -3.8 | 2/20 |
| 219768_at | VTCN1↑ | V-set domain containing T cell activation inhibitor 1 | 7.8 | 21/2 |
| 214657_s_at | TncRNA↑ | Trophoblast-derived noncoding RNA | 4.5 | 21/0 |
| 213004_at | ANGPTL2↑ | Angiopoietin-like 2 | n | 19/4 |
