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Table 6 CTLA-4 haplotype frequencies in breast cancer patients and healthy controls

From: Association of CTLA-4 gene polymorphisms with sporadic breast cancer in Chinese Han population

CTLA-4 haplotype

Freq.

Breast cancer (n = 117)

Healthy controls (n = 148)

P-value

Odds ratio (95% CI)

-1661

-658

-318

+49

CT60

     

A

C

C

G

A

0.25

22.1%

27.1%

0.19

 

A

C

C

A

G

0.22

25.5%

19.3%

0.089

 

A

C

C

A

A

0.20

16.5%

22.5%

0.085

 

G

C

T

A

A

0.062

8.1%

4.6%

0.081

 

A

C

C

G

G

0.058

8.0%

4.1%

0.053

 

G

C

C

A

A

0.052

6.5%

4.2%

0.22

 

A

T

C

G

A

0.040

1.1%

6.3%

0.0026a

0.17(0.05–0.54)

G

C

C

A

G

0.033

3.9%

2.8%

0.50

 

A

T

C

A

A

0.025

1.2%

3.5%

0.091

 

G

C

T

A

G

0.016

2.2%

1.1%

0.32

 

A

T

C

A

G

0.015

0.3%

2.5%

0.034

0.12(0.02–0.92)

A

C

T

A

A

0.010

2.0%

0.3%

0.062

 
  1. a P = 0.012 after correcting the P-value for multiple testing by Haploview program using 10,000 permutations.