Table 6 Transcription levels of TSS/PAS variants of cell adhesion-related proteins.
From: Pathway aberrations of murine melanoma cells observed in Paired-End diTag transcriptomes
| Â | Â | PET counts (cpm) | A:B ratio | |
|---|---|---|---|---|
Protein | Gene isoforms | Melan-a2 melanocytes (A) | B16F1 melanoma cells (B) | Â |
Collagen | Col2a1 | *S6-7E53T53: 15 | 0 | 30:0 |
| Â | Col1a2 | S31E52T52: 15 | 0 | Â |
Integrin | Itgb1 | S1E16T16: 44 | S1E16T16: 11 S1E10T16: 11 | 44:22 |
| Â | Itgb5 | S1E16T16: 15 *S6-7E16T16: 15 S14E16T16: 15 | 0 | 45:0 |
Actin | Actb | S1E2T6: 15 S1E6T6: 399 | S4E6T6: 11 S1E2T6: 1896 | 414:1907 |
| Â | Actg1 | S3E6T6: 15 S4E6T6: 15 S1E6T6: 876 | S1E6T6: 5260 | 906:5260 |
Cadherin | Cdh11 (not in KEGG) | *S2-3E6-7T13: 15 *S3E6-7T13: 15 | *S2-3E6-7T13: 11 | 30:11 |
JAM | Jam2 | S1E10T10: 15 | 0 | 15:0 |
| Â | Jam3 | S1E9T9: 15 | 0 | 15:0 |
β-catenin | Catnb | S1E1T15: 30 (skip*) S1E15T15: 15 | S11E15T15: 33 | 15:33 |
α-catenin | Catna1 | S4E18T18: 15 | S1E18T18: 22 S1E5T18: 11 S15E18T18: 11 | 15:44 |
Snail, Slug | Snail, Slug | 0 | 0 | 0:0 |
CD44 | Cd44 | S1E14T14: 15 | S1E14T14: 77 S1E12T14: 33 S1E4T14: 11 | l5:121 |
OPN (osteopontin) | Spp1 | S1E7T7: 1889 | 0 | 1889:0 |